A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
☆31Jul 8, 2026Updated last month
Alternatives and similar repositories for PyDKE
Users that are interested in PyDKE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Mar 5, 2024Updated 2 years ago
- A medical image converter☆32Jul 20, 2025Updated last year
- Script-framework using FSL, Freesurfer and AFNI functionality for automatization and high-throughput processing of MRI data in clustered …☆38Mar 12, 2017Updated 9 years ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆50May 19, 2021Updated 5 years ago
- Automatic White Matter Bundle Segmentation☆265Feb 23, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Perivascular (PVS) or Virchow–Robin Spaces (VRS) segmentation with a 3D Unet☆40Jun 8, 2026Updated 2 months ago
- Peak width of Skeletonized Mean Diffusivity (PSMD)☆21Apr 4, 2026Updated 4 months ago
- Matlab GUI for single R2*/T2* mapping with multi-echo GRE data☆14Oct 4, 2022Updated 3 years ago
- SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts☆14Feb 18, 2026Updated 5 months ago
- Two days dipy workshop☆12Nov 24, 2020Updated 5 years ago
- Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)☆74Jan 20, 2026Updated 6 months ago
- [MedIA 2023] "Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learn…☆24Jul 21, 2023Updated 3 years ago
- CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI☆13Mar 28, 2025Updated last year
- Various mri conversion/modification scripts☆24Jan 16, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python implementation of the TRX file format☆26Updated this week
- A UNet for the analysis of perfusion CT imaging in the setting of acute ischemic stroke.☆17May 8, 2025Updated last year
- BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)☆68Updated this week
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆351Updated this week
- [MICCAI 2022] Official Implementation for "Hybrid Spatio-Temporal Transformer Network for Predicting Ischemic Stroke Lesion Outcomes from…☆22May 1, 2023Updated 3 years ago
- Weakly supervised perivascular spaces segmentation with salient guidance of Frangi filter☆17May 21, 2026Updated 2 months ago
- Sequence Adaptive Multimodal SEGmentation (SAMSEG)☆19Updated this week
- real-time visualization of TMS-evoked potentials☆12Nov 29, 2023Updated 2 years ago
- CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI☆18Feb 10, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated subdivision of white matter hyperintensities☆12Jan 3, 2022Updated 4 years ago
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆40Nov 28, 2025Updated 8 months ago
- U fiber analysis: a toolbox for automated quantification of U-fibers and white matter hyperintensities☆12Jul 19, 2026Updated 3 weeks ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- Linear framework to combine tractography and tissue microstructure estimation with diffusion MRI☆52Updated this week
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo