Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
☆86Mar 4, 2026Updated 2 weeks ago
Alternatives and similar repositories for SlicerDMRI
Users that are interested in SlicerDMRI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- White matter tractography clustering and more...☆80Jun 13, 2025Updated 9 months ago
- Purifibre removes spurious streamlines from tractograms☆10Apr 14, 2022Updated 3 years ago
- ☆31Jun 2, 2025Updated 9 months ago
- ISBI 2023 - A Registration- and Uncertainty-based Framework for White Matter Tract Segmentation with Only One Annotated Subject☆10Sep 10, 2023Updated 2 years ago
- MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit☆102Feb 24, 2026Updated 3 weeks ago
- Automatic White Matter Bundle Segmentation☆256Feb 23, 2026Updated last month
- A Tractography Tool for Diffusion MRI☆153Mar 16, 2026Updated last week
- Please visit our new location: https://github.com/tractometry/pyAFQ☆60Oct 10, 2024Updated last year
- Tract based spatial statistics using ANTs and FSL☆17Mar 10, 2025Updated last year
- Simple Scripted Module to batch process patients in 3D Slicer☆16Jun 26, 2025Updated 8 months ago
- Harvard-Oxford Atlas 2.0 Subcortical parcellations of Human Connectome Project (HCP) subjects☆12Aug 7, 2024Updated last year
- MATLAB toolbox implementing template independent component analysis☆12Sep 14, 2020Updated 5 years ago
- Utility extension for 3D Slicer, containing tools and algorithms for building image guided surgery applications☆17Updated this week
- Bezier surface source and widget for VTK☆16Feb 4, 2017Updated 9 years ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆342Updated this week
- Validator for the Brain Imaging Data Structure☆35Updated this week
- This helps creating high quality figures for use in manuscripts and presentations.☆12May 14, 2025Updated 10 months ago
- WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque …☆18Dec 23, 2021Updated 4 years ago
- R package to implement template ICA☆11May 20, 2025Updated 10 months ago
- 3D Slicer extension for exporting Slicer scenes to use in the OpenAnatomy.org browser☆26Oct 8, 2025Updated 5 months ago
- An ITK ImageIO module for the OpenSlide library.☆12Nov 11, 2025Updated 4 months ago
- Multi-platform, free open source software for visualization and image computing.☆2,379Updated this week
- Collection of 3D Slicer modules mainly focused on deep brain stimulation applications.☆18Nov 10, 2025Updated 4 months ago
- Preprocessing of diffusion MRI☆178Updated this week
- defacing utility for MRI images☆136Mar 16, 2026Updated last week
- Node wrapper for DCMTK☆25Jan 3, 2023Updated 3 years ago
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆31Jul 24, 2025Updated 7 months ago
- fMRIPrep for Rodents☆13Feb 17, 2026Updated last month
- ☆23Jan 18, 2022Updated 4 years ago
- Slicer extensions index☆82Updated this week
- Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…☆54Updated this week
- Example extension for 3D Slicer that demonstrates how to make a Python script available as a CLI module☆20Feb 28, 2024Updated 2 years ago
- FSL-R Interface package☆45Sep 9, 2025Updated 6 months ago
- Radial Basis Functions in Julia☆15Updated this week
- Automated plotting of neuroimaging maps from Python using Connectome Workbench.☆16Apr 3, 2024Updated last year
- Tool for downloading ABCD_BIDS inputs and derivatives from the ABCD-BIDS NDA Collection 3165.☆24Aug 13, 2024Updated last year
- A Julia package for managing changelogs☆20Mar 27, 2025Updated 11 months ago
- 3D Slicer extension to create tube or closed surface model from markup fiducials☆15Aug 27, 2023Updated 2 years ago
- This version is OBSOLETE. Please use http://github.com/thalamicseg/hipsthomasdocker which is the latest and maintained © Copyright Manoj…☆25Oct 10, 2025Updated 5 months ago