Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call sCNA, and perform subclonal reconstruction
☆20Nov 24, 2025Updated 6 months ago
Alternatives and similar repositories for metapipeline-DNA
Users that are interested in metapipeline-DNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- ☆13Updated this week
- Highly informative TCR representation model☆16Nov 26, 2025Updated 6 months ago
- ☆27Dec 19, 2025Updated 5 months ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆22Dec 2, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gene copy number prediction from k-mer frequencies☆17Apr 15, 2026Updated 2 months ago
- Equivariant layers for RC-complement symmetry in DNA sequence data☆13Feb 24, 2022Updated 4 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Tools for the analysis of heterogeneous tissues☆15Aug 24, 2022Updated 3 years ago
- ☆15Feb 28, 2025Updated last year
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Fast and scalable nanopore adaptive sampling☆36Jun 6, 2023Updated 3 years ago
- Tensorflow implementation for the Class-wise Selective Rationalization☆14Feb 15, 2023Updated 3 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆24Oct 21, 2025Updated 7 months ago
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 9 months ago
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆27Updated this week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 2 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆11Nov 7, 2024Updated last year
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆26Dec 15, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.☆13Aug 19, 2024Updated last year
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- 将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆41Sep 17, 2025Updated 8 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated 2 months ago
- mime generator (email with attachments), no parser yet☆23Aug 24, 2023Updated 2 years ago
- ☆39Oct 29, 2025Updated 7 months ago
- vcfdist: Accurately benchmarking phased variant calls☆87Feb 23, 2026Updated 3 months ago
- A deep learning approach to de novo variant calling in next generation sequencing data☆21Apr 23, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- Covid-19 HGI WES/WGS burden test BQC-19 pipeline☆16May 26, 2022Updated 4 years ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 6 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated last month
- ☆34Nov 25, 2025Updated 6 months ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 3 months ago
- Subclassification of disease states based on the intersection of literature and expression☆13Jan 15, 2019Updated 7 years ago