Bhattacharya-Lab / PolyFoldLinks
An interactive visual simulator for distance-based protein folding
☆24Updated 4 years ago
Alternatives and similar repositories for PolyFold
Users that are interested in PolyFold are comparing it to the libraries listed below
Sorting:
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆51Updated last year
- ☆36Updated 9 months ago
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling☆21Updated 5 years ago
- pytorch implementation of trDesign☆45Updated 4 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆82Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- PyTorch library of layers acting on protein representations☆119Updated last year
- The official implementation of Energy-Inspired Molecular Conformation Optimization (ICLR 2022)☆36Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆49Updated last year
- ☆21Updated 5 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆58Updated 3 years ago
- An experimental package for deep learning for molecular docking☆20Updated 5 years ago
- Protein contacts prediction using deep learning models☆77Updated 6 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆74Updated 4 years ago
- PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms☆56Updated 2 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 4 years ago
- SE(3)-equivariant point cloud networks for virtual screening☆20Updated 2 years ago
- A Python package to calculate, visualize and analyze correlation maps of proteins.☆41Updated 2 months ago
- Protein quality assessment using Graph Convolutional Networks☆29Updated 2 years ago
- Open source code for AlphaFold to extract protein embeddings☆27Updated 3 years ago
- ☆29Updated 5 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 3 years ago
- Massively-Parallel Natural Extension of Reference Frame☆31Updated 2 years ago
- Synthetic coordinates for GNNs, as proposed in "Directional Message Passing on Molecular Graphs via Synthetic Coordinates" (NeurIPS 2021)☆30Updated 2 years ago
- Universal Transforming Geometric Network for protein structure prediction.☆8Updated 4 years ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆47Updated last month
- ☆109Updated 2 years ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year