baliga-lab / cmonkey2View external linksLinks
Python port of cMonkey, a machine-learning based method for clustering
☆26Apr 15, 2024Updated last year
Alternatives and similar repositories for cmonkey2
Users that are interested in cmonkey2 are comparing it to the libraries listed below
Sorting:
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ☆10Oct 9, 2024Updated last year
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 4 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- cgat-apps repository☆34Apr 9, 2025Updated 10 months ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- Instagram Session ID Brute-forcer☆11Oct 8, 2022Updated 3 years ago
- ChIP-seq and ATAC-seq analysis☆13Jun 17, 2024Updated last year
- ☆27Feb 4, 2026Updated last week
- ☆10Jan 19, 2019Updated 7 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆10Dec 29, 2025Updated last month
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆10Sep 5, 2024Updated last year
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 4 years ago
- NEFF Calculator and MSA File Converter☆13Sep 16, 2025Updated 4 months ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Mar 16, 2021Updated 4 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- Taiga for Dataset management☆12Feb 5, 2026Updated last week
- Vignettes for Cardinal3 paper☆10Feb 20, 2023Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 4 years ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- flexible pipelines for scalable secretome prediction, R package☆12Feb 21, 2019Updated 6 years ago
- TF-DNA-binding assay analysis pipeline☆12Aug 25, 2020Updated 5 years ago
- Code repository for the Global Ant Genomics Alliance☆16Jun 16, 2025Updated 7 months ago
- wrapper functions to use ggstatsplot functions as a module in jamovi☆11Jan 17, 2026Updated 3 weeks ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- Reinforcement Learning agents for a selection Hyper-Heuristic☆11Sep 10, 2022Updated 3 years ago
- A scikit-learn implementation based on ExSTraCS 2.0☆11Jun 3, 2025Updated 8 months ago
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆11Nov 6, 2025Updated 3 months ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 5 years ago
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 3 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- stageR package☆13Feb 28, 2023Updated 2 years ago
- Scripts and documentations on the MCSC decontamination method☆10Jun 13, 2023Updated 2 years ago