IBPA / GNN
Gene Neural Network (GNN)
☆11Updated 5 years ago
Alternatives and similar repositories for GNN:
Users that are interested in GNN are comparing it to the libraries listed below
- ☆14Updated 3 years ago
- ☆11Updated 5 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction☆17Updated 3 years ago
- Interpretable splicing model☆20Updated last year
- Biological Network Integration using Convolutions☆61Updated last year
- ☆12Updated 3 years ago
- ☆20Updated 3 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- A combination of RoBERTa trained from scratch on masking histone modification patterns rather than the English language and XGBoost, pred…☆13Updated 3 years ago
- ☆16Updated 2 months ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆24Updated last year
- Network-based project to explore gene connectivity through biological scales☆23Updated 4 months ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆17Updated 3 years ago
- Scripts used to generate the ClinVar conflicting classifications dataset on Kaggle☆14Updated 4 years ago
- Code for the analyses in the human reference interactome paper.☆26Updated 2 years ago
- ☆19Updated 4 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆18Updated 2 years ago
- ☆14Updated 2 years ago
- Python implementation of PANDA (Passing Attributes between Networks for Data Assimilation)☆39Updated 6 years ago
- Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding☆17Updated 5 years ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- Taxonomy of Benchmarks in Graph Representation Learning☆19Updated 2 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]☆17Updated 3 years ago
- Python script to facilitate easy automatic pulling of new papers from Arxiv, Biorxiv, and Medrxiv with custom search features.☆22Updated 3 years ago
- Pathway-based sparse deep neural network☆16Updated 4 years ago
- Network inference by fusing data from diverse distributions☆14Updated 8 years ago
- The full training script for Enformer - Tensorflow Sonnet☆17Updated 2 years ago
- ☆20Updated 3 months ago