IBPA / GNN
Gene Neural Network (GNN)
☆12Updated 5 years ago
Alternatives and similar repositories for GNN:
Users that are interested in GNN are comparing it to the libraries listed below
- A software for hypergraph and multi-way network analysis 🌐☆21Updated this week
- Interpretable splicing model☆19Updated last year
- Python script for processing DrugBank XML to MySQL-ready CSV files☆16Updated 7 years ago
- Hypergraph Factorisation☆22Updated last month
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Network-based project to explore gene connectivity through biological scales☆23Updated 2 months ago
- Biological Network Integration using Convolutions☆60Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.☆24Updated last year
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆17Updated 3 years ago
- Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction☆16Updated 3 years ago
- ☆14Updated 2 years ago
- Pathway-based sparse deep neural network☆15Updated 4 years ago
- A combination of RoBERTa trained from scratch on masking histone modification patterns rather than the English language and XGBoost, pred…☆13Updated 3 years ago
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 4 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆82Updated 2 years ago
- Python script to facilitate easy automatic pulling of new papers from Arxiv, Biorxiv, and Medrxiv with custom search features.☆21Updated 3 years ago
- ☆12Updated 3 years ago
- Disease pathways in the human interactome☆24Updated 6 years ago
- An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.☆67Updated last month
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- ☆14Updated 3 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆17Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆26Updated 2 years ago
- Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction☆28Updated last year
- The full training script for Enformer - Tensorflow Sonnet☆17Updated 2 years ago
- ☆28Updated 3 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 3 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆121Updated 2 years ago