BojarLab / SweetNetLinks
Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]
☆17Updated 4 years ago
Alternatives and similar repositories for SweetNet
Users that are interested in SweetNet are comparing it to the libraries listed below
Sorting:
- ☆34Updated 5 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 3 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 4 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 4 years ago
- ☆34Updated 7 months ago
- ☆12Updated last year
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)☆26Updated 5 years ago
- A Modular Architecture for Deep Learning Systems☆49Updated 7 months ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 5 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆23Updated 2 years ago
- Inpainting protein sequence and structure☆12Updated 2 years ago
- A new retrieval-based framework for controllable molecule generation.☆49Updated 2 years ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Updated last year
- Code for 'On Pre-trained Language Models For Antibody'☆32Updated 2 years ago
- ☆11Updated 7 months ago
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Updated 3 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 3 years ago
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- Predicting protein structure through sequence modeling☆112Updated 5 years ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated last year
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Updated 4 years ago
- Protein Language Model☆121Updated last year
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆52Updated 2 years ago
- ML-guided enzyme engineering☆69Updated 2 months ago
- Molecular Generation for Desired Transcriptome Changes with Adversarial Autoencoders☆53Updated 5 years ago
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆75Updated 2 years ago
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆98Updated 3 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆32Updated 2 years ago