Alternatives and similar repositories for GeneBERT

Users that are interested in GeneBERT are comparing it to the libraries listed below

• DataX-JieHao / PASNet
  Pathway-based sparse deep neural network
  ☆19Updated 5 years ago
• songlab-cal / factored-attention
  This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …
  ☆58Updated 3 years ago
• biomed-AI / GraphCS
  ☆14Updated 4 years ago
• gcorso / NeuroSEED
  Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
  ☆73Updated 2 years ago
• lucidrains / tf-bind-transformer
  A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
  ☆88Updated 3 years ago
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆12Updated 4 years ago
• vandijklab / scGAT
  Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…
  ☆18Updated 5 years ago
• OpenBioML / project-proposal-template
  The project proposal template for OpenBioML community projects.
  ☆18Updated 2 years ago
• shu65 / open-problems-multimodal
  1st place solution of Kaggle Open Problems - Multimodal Single-Cell Integration
  ☆44Updated 2 years ago
• jacobvsdanniel / pubmedkb_core
  ☆15Updated 3 years ago
• XieResearchGroup / CODE-AE
  Coherent Deconfounding Autoencoder (CODE-AE) can extract both common biological signals shared by incoherent samples and private represen…
  ☆21Updated last year
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• Genentech / dcdfg
  ☆28Updated 3 years ago
• WGLab / Bioformer
  Bioformer: an efficient BERT model for biomedical text mining
  ☆55Updated 2 years ago
• LincolnSteinLab / MMDRP
  Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning
  ☆14Updated last year
• DasLab / KaggleOpenVaccine
  ☆56Updated last year
• mnielLab / NetTCR-2.2
  Sequence-based prediction of peptide-TCR interactions using paired chain data
  ☆13Updated last year
• xinglab-ai / genomap
  Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
  ☆19Updated last year
• eternagame / EternaBrain
  Deep learning to solve RNA design puzzles
  ☆19Updated 11 months ago
• kexinhuang12345 / ml-genomics-resources
  Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)
  ☆79Updated 4 years ago
• melobio / LOGO
  ☆19Updated 3 years ago
• regev-lab / interpretable-splicing-model
  Interpretable splicing model
  ☆22Updated 2 years ago
• googleinterns / protein-embedding-retrieval
  ☆34Updated 5 years ago
• welch-lab / MichiGAN
  Learning disentangled representations of single-cell data for high-quality generation
  ☆16Updated last year
• technion-cs-nlp / BiologicalTokenizers
  Effect of tokenization on transformers for biological sequence
  ☆21Updated last week
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆42Updated last year
• NikolayOskolkov / HowUMAPWorks
  Here I explain the math behind UMAP and show how to program it from scratch in Python
  ☆38Updated 4 years ago
• gersteinlab / DeepVelo
  ☆14Updated 3 years ago
• openproblems-bio / neurips2021-notebooks
  ☆30Updated 4 years ago