Alternatives and similar repositories for GeneBERT

Users that are interested in GeneBERT are comparing it to the libraries listed below

• songlab-cal / factored-attention
  This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …
  ☆58Updated 3 years ago
• biomed-AI / GraphCS
  ☆14Updated 3 years ago
• DataX-JieHao / PASNet
  Pathway-based sparse deep neural network
  ☆19Updated 5 years ago
• gcorso / NeuroSEED
  Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
  ☆73Updated 2 years ago
• Genentech / dcdfg
  ☆28Updated 3 years ago
• lucidrains / tf-bind-transformer
  A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
  ☆88Updated 3 years ago
• kexinhuang12345 / ml-genomics-resources
  Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)
  ☆80Updated 4 years ago
• vandijklab / scGAT
  Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…
  ☆18Updated 5 years ago
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• BoHuangLab / Protein-Localization-Transformer
  Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction
  ☆29Updated 2 years ago
• welch-lab / MichiGAN
  Learning disentangled representations of single-cell data for high-quality generation
  ☆16Updated last year
• OpenBioML / project-proposal-template
  The project proposal template for OpenBioML community projects.
  ☆18Updated 2 years ago
• bozdaglab / SUPREME
  SUPREME: A GCN based approach for cancer subtype prediction
  ☆18Updated 2 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆42Updated last year
• regev-lab / interpretable-splicing-model
  Interpretable splicing model
  ☆21Updated 2 years ago
• biomed-AI / GraphSCC
  single-cell RNA-seq clustering
  ☆10Updated 5 years ago
• wangshenguiuc / set2gaussian
  code repo for Set2Gaussian
  ☆16Updated 5 years ago
• hypnopump / ClynMut
  To be a next-generation DL-based phenotype prediction from genome mutations.
  ☆19Updated 4 years ago
• jacobvsdanniel / pubmedkb_core
  ☆15Updated 3 years ago
• lucidrains / flash-genomics-model
  My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…
  ☆55Updated 2 years ago
• DasLab / KaggleOpenVaccine
  ☆55Updated last year
• BioMedBERT / biomedbert
  BioMedBERT: A Pre-trained Biomedical Language Model for QA and IR
  ☆31Updated 4 years ago
• ml-jku / DeepRC
  DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning
  ☆122Updated 2 years ago
• alrojo / UniLanguage
  Homology reduced UniProt, train-/valid-/testsets for language modeling
  ☆16Updated 3 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆63Updated last year
• openproblems-bio / neurips2021-notebooks
  ☆30Updated 3 years ago
• Qihao-Duan / JanusDNA
  JanusDNA
  ☆21Updated 3 months ago
• gdewael / cpg-transformer
  CpG Transformer for imputation of single-cell methylomes
  ☆36Updated 2 years ago
• xypan1232 / iDeepV
  iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.
  ☆10Updated 6 years ago
• gersteinlab / DeepVelo
  ☆14Updated 3 years ago