ZovcIfzm / GeneBERTLinks
A combination of RoBERTa trained from scratch on masking histone modification patterns rather than the English language and XGBoost, predicting differential gene expression from histone modifications.
☆13Updated 4 years ago
Alternatives and similar repositories for GeneBERT
Users that are interested in GeneBERT are comparing it to the libraries listed below
Sorting:
- Pathway-based sparse deep neural network☆18Updated 4 years ago
- ☆14Updated 3 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- BioMedBERT: A Pre-trained Biomedical Language Model for QA and IR☆28Updated 4 years ago
- Deep learning to solve RNA design puzzles☆19Updated 6 months ago
- ☆33Updated 2 years ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆72Updated last year
- The project proposal template for OpenBioML community projects.☆18Updated 2 years ago
- Coherent Deconfounding Autoencoder (CODE-AE) can extract both common biological signals shared by incoherent samples and private represen…☆17Updated 10 months ago
- Human Protein Atlas image classification competition☆13Updated 2 years ago
- ☆14Updated 2 years ago
- ☆35Updated 3 months ago
- single-cell RNA-seq clustering☆10Updated 4 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆17Updated 5 years ago
- ☆26Updated 2 years ago
- Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)☆79Updated 3 years ago
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆53Updated 2 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆85Updated 3 years ago
- ☆34Updated 4 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 4 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.☆75Updated last week
- Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network☆86Updated 2 years ago
- Processing SIDER 4.1: the side effect resource☆23Updated 9 years ago
- ☆19Updated 2 years ago
- Learning disentangled representations of single-cell data for high-quality generation☆16Updated last year
- Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction☆29Updated last year
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- code repo for Set2Gaussian☆16Updated 5 years ago
- Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)☆19Updated last year