Genentech / dcdfg

Related projects ⓘ

Alternatives and complementary repositories for dcdfg

• causalbench / causalbench
  ☆34Updated 2 weeks ago
• Genentech / sVAE
  ☆56Updated last year
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆55Updated 6 months ago
• slachapelle / dcdi
  Repository for "Differentiable Causal Discovery from Interventional Data"
  ☆72Updated 2 years ago
• azizilab / sdcd
  Stable Differentiable Causal Discovery (SDCD)
  ☆16Updated 5 months ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆33Updated 5 months ago
• rvinas / HYFA
  Hypergraph Factorisation
  ☆21Updated last year
• KrishnaswamyLab / MIOFlow
  ☆20Updated last month
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆66Updated 9 months ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆37Updated last year
• lazaratan / dyn-gfn
  DynGFN: Bayesian Dynamic Causal Discovery using Generative Flow Networks
  ☆50Updated 8 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆118Updated 3 weeks ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆48Updated 2 years ago
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆15Updated 8 months ago
• openproblems-bio / neurips2021-notebooks
  ☆28Updated 2 years ago
• ioanabica / DiffVAE
  Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…
  ☆18Updated 4 years ago
• rs239 / schema
  Framework for integrating heterogeneous modalities of data
  ☆16Updated 2 years ago
• openproblems-bio / neurips2021_multimodal_topmethods
  ☆74Updated 2 years ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆31Updated last month
• calico / scmmd
  Maximum mean discrepancy comparisons for single cell profiling experiments
  ☆15Updated 2 years ago
• yulun-rayn / graphVCI
  This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…
  ☆15Updated last year
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆31Updated 3 weeks ago
• dpeerlab / WassersteinWormhole
  Transformer Based Embeddings of Wasserstein Distance
  ☆13Updated 2 weeks ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆22Updated 3 months ago
• ruiyi-zhang / scPretrain
  scPretrain: Multi-task self-supervised learning for cell type classification
  ☆22Updated 2 years ago
• uhlerlab / causaldag
  Python package for the creation, manipulation, and learning of Causal DAGs
  ☆148Updated last year
• welch-lab / MichiGAN
  Learning disentangled representations of single-cell data for high-quality generation
  ☆15Updated 8 months ago
• gemoran / sparse-vae-code
  ☆31Updated 2 years ago
• biomed-AI / GraphSCI
  Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks
  ☆18Updated 5 months ago
• cnellington / Contextualized
  An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.
  ☆67Updated 2 weeks ago