Python project to validate a phylogenetic fitted models is within the limits of inference
☆20Apr 13, 2026Updated 4 months ago
Alternatives and similar repositories for PhyLim
Users that are interested in PhyLim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for analysis of sequence divergence☆15Updated this week
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Jun 25, 2026Updated last month
- A new approach to obtaining local copies of ensembl data☆24Apr 23, 2026Updated 3 months ago
- Comparative Genomics Toolkit 3☆137Updated this week
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆50Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆47Jul 12, 2026Updated last month
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Jul 26, 2026Updated 2 weeks ago
- Standarise data with an AI assistant☆17Apr 8, 2025Updated last year
- [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning☆25Jan 26, 2024Updated 2 years ago
- Two methods for mapping and visualizing associated data on phylogeny using ggtree☆12Dec 25, 2018Updated 7 years ago
- An R package for detecting and analysing climate windows☆14Jun 13, 2026Updated 2 months ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- ☆11Apr 3, 2023Updated 3 years ago
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆98Mar 6, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 9 months ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 8 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 2 weeks ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆16May 7, 2026Updated 3 months ago
- Trim adapters from MGI sequence data☆14Jun 11, 2023Updated 3 years ago
- Deep Clustering Learning☆12Aug 8, 2019Updated 7 years ago
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated 2 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Beacon v2 Reference Implementation (API)☆17Dec 13, 2024Updated last year
- Assembling phage particles one protein at a time☆26Aug 3, 2026Updated last week
- A solutions manual for all excercises in the Ziheng Yang's two seminall books on statistical molecular evolution: Computational Molecular…☆28Jun 24, 2026Updated last month
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆335Jul 22, 2026Updated 3 weeks ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- Fungal Genome Mapping Pipeline☆19Jun 9, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Predict air quality level in different weather conditions☆33Aug 8, 2020Updated 6 years ago
- Python implementation of label propagation☆19Jun 29, 2016Updated 10 years ago
- ☆14Dec 15, 2025Updated 8 months ago
- Workflow Description Language (WDL) scripts for common vg workflows☆25Updated this week
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 5 months ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆19Jul 19, 2013Updated 13 years ago
- Plot ideogams and simple gene tracks with matplotlib☆25Jan 20, 2026Updated 6 months ago