Python project to validate a phylogenetic fitted models is within the limits of inference
β20Apr 13, 2026Updated 3 months ago
Alternatives and similar repositories for PhyLim
Users that are interested in PhyLim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for analysis of sequence divergenceβ15Updated this week
- π𧬠GraphBin-Tk: assembly graph-based metagenomic binning toolkitβ24Jun 25, 2026Updated last month
- A new approach to obtaining local copies of ensembl dataβ24Apr 23, 2026Updated 3 months ago
- Comparative Genomics Toolkit 3β136Updated this week
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inferenceβ49Updated this week
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and moreβ47Jul 12, 2026Updated 2 weeks ago
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ69Jun 15, 2026Updated last month
- Reference-free Binning of Metagenomics Long Reads using Coverage and Compositionβ20Sep 10, 2024Updated last year
- [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binningβ25Jan 26, 2024Updated 2 years ago
- Two methods for mapping and visualizing associated data on phylogeny using ggtreeβ12Dec 25, 2018Updated 7 years ago
- An R package for detecting and analysing climate windowsβ14Jun 13, 2026Updated last month
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.β12Feb 27, 2019Updated 7 years ago
- β11Apr 3, 2023Updated 3 years ago
- β¨π§¬ Refined binning of metagenomic contigs using assembly graphsβ98Mar 6, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphsβ37Oct 24, 2025Updated 9 months ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.β14Dec 4, 2025Updated 7 months ago
- π¦ 𧬠Unraveling Viral Genomes from Metagenomesβ11Updated this week
- A comprehensive R package for label-free proteomics data analysis and modelingβ16May 7, 2026Updated 2 months ago
- Trim adapters from MGI sequence dataβ14Jun 11, 2023Updated 3 years ago
- Deep Clustering Learningβ12Aug 8, 2019Updated 6 years ago
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!β14May 12, 2024Updated 2 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.β10Jul 16, 2017Updated 9 years ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.β12Nov 21, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Quickly get coverage statistics given reads and an assemblyβ17May 13, 2024Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)β22May 3, 2025Updated last year
- Beacon v2 Reference Implementation (API)β17Dec 13, 2024Updated last year
- Assembling phage particles one protein at a timeβ24May 4, 2026Updated 2 months ago
- A solutions manual for all excercises in the Ziheng Yang's two seminall books on statistical molecular evolution: Computational Molecularβ¦β26Jun 24, 2026Updated last month
- Code used to analyse and plot metadata of metagenomic binning toolsβ14Aug 22, 2024Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihoodβ334Updated this week
- CHM13 human reference genome issue trackingβ20Jan 18, 2024Updated 2 years ago
- Fungal Genome Mapping Pipelineβ19Jun 9, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Experimenting with cross-platform clipboard support for files in Rustβ14Dec 31, 2024Updated last year
- Predict air quality level in different weather conditionsβ33Aug 8, 2020Updated 5 years ago
- Python implementation of label propagationβ19Jun 29, 2016Updated 10 years ago
- β14Dec 15, 2025Updated 7 months ago
- Workflow Description Language (WDL) scripts for common vg workflowsβ25Jul 7, 2026Updated 2 weeks ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.β24Feb 22, 2026Updated 5 months ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomyβ19Jul 19, 2013Updated 13 years ago