A Python package to quickly decompose weighted graphs (acyclic or not) into weighted paths or walks, under various models.
☆14Jun 30, 2026Updated 4 months ago
Alternatives and similar repositories for flowpaths
Users that are interested in flowpaths are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EMERALD calculates safety-windows by exploring the suboptimal alignment space☆19Jun 15, 2026Updated 4 months ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 11 months ago
- ☆14Dec 26, 2025Updated 10 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated 2 years ago
- Find and decompose genomic variation sites in pangenome graphs☆17Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆55Nov 2, 2026Updated last week
- Pangenome file formats based on SQLite☆16Updated this week
- ☆32Mar 27, 2024Updated 2 years ago
- Assembly topology from long-read alignments☆10Jul 24, 2026Updated 3 months ago
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.☆11Oct 14, 2026Updated 3 weeks ago
- Trim lots of metagenomics samples all at once☆10May 2, 2024Updated 2 years ago
- AlfaPang builds pangenome graphs without alignments or references.☆18Oct 16, 2026Updated 3 weeks ago
- Fast Approximate Pattern Matching using Search Schemes☆20Jul 11, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Feb 25, 2026Updated 8 months ago
- Serverless implementation of Beacon V2 protocol, to enable cheaper and faster exchange of genomic and phenotypic information☆15Jun 1, 2026Updated 5 months ago
- Brain2Word:Decoding Brain Activity for Language Generation☆11Oct 20, 2020Updated 6 years ago
- Dis interpreter by Rob Pike☆13Sep 3, 2020Updated 6 years ago
- ☆25Sep 22, 2026Updated last month
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆33Aug 10, 2026Updated 3 months ago
- ☆11Sep 11, 2024Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆58Aug 11, 2026Updated 3 months ago
- Compacted and colored de Bruijn graph construction and querying☆101Nov 3, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A terminal-based renderer for OpenGL shaders. Like Shadertoy, but in the terminal.☆12Sep 24, 2023Updated 3 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆16May 7, 2026Updated 6 months ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated last year
- Vanjari is a tool for the classification of viruses using neural networks☆14Nov 21, 2025Updated 11 months ago
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated 2 years ago
- Replica of the 8088 processor card for the CBM-II computers☆10Mar 4, 2021Updated 5 years ago
- A 9Front file server for interacting with Philips Wiz light bulbs☆11Aug 17, 2025Updated last year
- core library code☆11Nov 4, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Lua for Plan9 space☆10Jul 5, 2025Updated last year
- BWK awk modified for biological data☆10Sep 20, 2021Updated 5 years ago
- Optional argument checks allow you to omit them when performance is critical.☆10Aug 31, 2022Updated 4 years ago
- Trim adapters from MGI sequence data☆14Jun 11, 2023Updated 3 years ago
- file tree union server for Plan 9☆12Aug 6, 2021Updated 5 years ago
- Software program for generating synthetic datasets for genotypes and phenotypes☆25Jun 1, 2023Updated 3 years ago
- ☆32Dec 16, 2022Updated 3 years ago
Are these results useful?