sib-swiss / sparql-training
This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
☆10Updated 4 months ago
Alternatives and similar repositories for sparql-training:
Users that are interested in sparql-training are comparing it to the libraries listed below
- Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compo…☆46Updated 2 years ago
- ☆12Updated this week
- Template for creating a BioCypher-driven knowledge graph☆12Updated 3 months ago
- Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referenc…☆21Updated 3 years ago
- Ontology cross-reference and mapping service☆18Updated 7 months ago
- A stitching platform for InXight☆16Updated 4 months ago
- 🪝 What's the latest version for each database?☆27Updated this week
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆51Updated 3 weeks ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)☆40Updated last week
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆16Updated 7 months ago
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated 9 months ago
- Build PharMeBINet from different sources.☆14Updated this week
- Adverse Outcome Pathway Ontology☆11Updated 11 months ago
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.☆21Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated 11 months ago
- National Microbiome Data Collaborative (NMDC) unified data model☆30Updated this week
- Faultless AST for Open Biomedical Ontologies in Python.☆28Updated this week
- LLM-based gene function enrichment tool☆10Updated 2 weeks ago
- ☆13Updated 2 years ago
- ☆20Updated 3 months ago
- Project code for BioHackathon Europe 2023.☆18Updated 6 months ago
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆42Updated last year
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…☆50Updated 7 months ago
- 👁️🗨️ Scientists often do the same bad stuff. Automate giving feedback during peer review.☆27Updated 5 months ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆120Updated this week
- A place for all knowledge regarding Research Data Management (RDM) in Chemistry☆11Updated last week
- Describe RDF model and automatically generate SPARQL queries, schema chart, TogoStanza etc.☆13Updated last week
- Build for NCBITaxon☆27Updated last week
- ☆13Updated 8 months ago
- A tutorial on using Open Biological and Biomedical Ontologies (OBO)☆56Updated 5 years ago