kyunghyuncho / pubmed-vectorsLinks
☆34Updated last year
Alternatives and similar repositories for pubmed-vectors
Users that are interested in pubmed-vectors are comparing it to the libraries listed below
Sorting:
- Template for creating a BioCypher-driven knowledge graph☆12Updated last month
- ☆31Updated 10 months ago
- ☆58Updated 3 months ago
- An aviary-based data science agent based on jupyter notebooks☆42Updated 2 months ago
- ☆24Updated 3 months ago
- The advanced implementation for BioChatter, using Next.js☆15Updated 10 months ago
- Benchmark for LLM-based Agents in Computational Biology☆65Updated 2 months ago
- The light frontend for BioChatter, in pure Python☆54Updated 5 months ago
- 🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface.☆20Updated 8 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆91Updated 5 months ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆72Updated 4 months ago
- Automated Hypothesis Testing with Agentic Sequential Falsifications☆234Updated 7 months ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆79Updated 2 years ago
- The landscape of biomedical research☆121Updated 5 months ago
- ☆97Updated last week
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆38Updated 4 months ago
- BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.☆55Updated last year
- Python package that wraps around the ClinicalTrials.gov API☆56Updated last year
- ☆15Updated last year
- ☆31Updated 2 years ago
- MedEmbed is a collection of embedding models fine-tuned specifically for medical and clinical data.☆84Updated 3 weeks ago
- ☆39Updated 6 months ago
- AIONER☆62Updated last year
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆136Updated 3 months ago
- Versatile framework designed to streamline the integration of your models, as well as those sourced from Hugging Face, into complex progr…☆34Updated 3 months ago
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- ☆31Updated 6 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆84Updated 4 months ago
- Proof of concept code from Gretel.ai and Illumina using generative neural networks to create synthetic versions of mouse genotype and phe…☆33Updated 3 years ago
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆33Updated 2 weeks ago