QizhiPei / BioT5Links
BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)
☆114Updated 9 months ago
Alternatives and similar repositories for BioT5
Users that are interested in BioT5 are comparing it to the libraries listed below
Sorting:
- Associated Repository for "Translation between Molecules and Natural Language"☆177Updated last year
- ☆46Updated last year
- [ICLR 2024] Domain-Agnostic Molecular Generation with Chemical Feedback☆168Updated 6 months ago
- Must-read papers on NLP for science.☆58Updated 2 years ago
- ☆50Updated last year
- A comprehensive repository dedicated to the collection and exploration of studies utilizing Large Language Models for molecular design, p…☆41Updated last year
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆47Updated last year
- Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023☆40Updated 9 months ago
- Code for the paper Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language☆98Updated 9 months ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆147Updated 3 months ago
- Official repository for MolCRAFT series☆96Updated 2 weeks ago
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆125Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆89Updated 2 years ago
- InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery (COLING 2025)☆47Updated 6 months ago
- SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction (Briefings in Bioinformatics 2023)☆52Updated last year
- Chemical-Reaction-Aware Molecule Representation Learning☆77Updated 3 years ago
- LLM for Drug Editing, ICLR 2024☆149Updated last year
- Multi-modal Molecule Structure-text Model for Text-based Editing and Retrieval, Nat Mach Intell 2023 (https://www.nature.com/articles/s42…☆227Updated 5 months ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆51Updated last year
- Source code for "A Deep-learning System Bridging Molecule Structure and Biomedical Text with Comprehension Comparable to Human Profession…☆89Updated last year
- ☆48Updated 2 years ago
- [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design☆84Updated 6 months ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆97Updated last year
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆214Updated 2 months ago
- ☆40Updated last year
- The official implementation of dual-view molecule pre-training.☆41Updated 3 years ago
- A new retrieval-based framework for controllable molecule generation.☆47Updated 2 years ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆86Updated 5 months ago
- A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text☆30Updated 3 weeks ago
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Updated last year