Alternatives and similar repositories for surface_morphometrics

Users that are interested in surface_morphometrics are comparing it to the libraries listed below

• brisvag / blik
  Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
  ☆25Updated 5 months ago
• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆24Updated 2 months ago
• CellArchLab / MemBrain
  ☆31Updated last year
• KosinskiLab / colabseg
  Jupyter-based tool for membrane segmentation manipulation
  ☆9Updated last year
• cellcanvas / surforama
  a tool for using surfaces to explore volumetric data in napari
  ☆18Updated last week
• teamtomo / membrain-seg
  membrane segmentation in 3D for cryo-ET
  ☆65Updated 2 weeks ago
• juglab / cryoCARE_pip
  PIP package of cryoCARE
  ☆33Updated last year
• bionanopatterning / Ais
  ☆17Updated this week
• bionanopatterning / scNodes
  ☆13Updated 2 months ago
• carsonpurnell / cryotomosim_CTS
  cryo-EM tomogram simulator
  ☆25Updated 2 months ago
• MPI-Dortmund / cryolo
  cryolo documentation
  ☆10Updated last year
• cryo-et-standards / cryoet-geometry
  A possible schema for cryoET geometry metadata
  ☆10Updated 3 months ago
• juglab / cryoCARE_T2T
  Singularity image for cryo-CARE
  ☆32Updated 3 years ago
• teamtomo / teamtomo-site-archive
  A collaborative knowledge sharing platform for the cryo-ET community
  ☆20Updated 9 months ago
• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆13Updated 3 months ago
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆35Updated last year
• rkms86 / SUSAN
  ☆10Updated last month
• builab / subtomo2Chimera
  ☆18Updated 2 months ago
• alisterburt / autoalign_dynamo
  automated on-the-fly tilt-series alignment
  ☆10Updated 3 years ago
• wan-lab-vanderbilt / STOPGAP
  STOPGAP is a MATLAB-based package for subtomogram averaging.
  ☆34Updated 9 months ago
• SBC-Utrecht / pytom-match-pick
  GPU-accelerated template matching for cryo-ET
  ☆36Updated last month
• wan-lab-vanderbilt / TOMOMAN
  A set of MATLAB wrapper scripts to help with pre-processing of tomography data.
  ☆19Updated 8 months ago
• warpem / warp
  ☆52Updated this week
• tomotools / tomotools
  Scripts to make cryo-electron tomography a bit easier
  ☆13Updated 2 weeks ago
• czimaginginstitute / AreTomo2
  ☆47Updated 8 months ago
• dtegunov / membranorama
  A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.
  ☆15Updated 2 years ago
• logicvay2010 / TomoNet
  TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing
  ☆17Updated last week
• DeMarcoLab / autolamella
  autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
  ☆19Updated this week
• alisterburt / napari-mrcfile-reader
  Read MRC format image files into napari using the mrcfile package from CCP-EM
  ☆18Updated last year
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆11Updated last month