GrotjahnLab / surface_morphometrics
Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
☆23Updated last month
Alternatives and similar repositories for surface_morphometrics:
Users that are interested in surface_morphometrics are comparing it to the libraries listed below
- ☆31Updated last year
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆24Updated 2 months ago
- PIP package of cryoCARE☆28Updated 11 months ago
- cryo-EM tomogram simulator☆24Updated last week
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆23Updated 4 months ago
- Jupyter-based tool for membrane segmentation manipulation☆9Updated 10 months ago
- Singularity image for cryo-CARE☆30Updated 3 years ago
- ☆14Updated last week
- membrane segmentation in 3D for cryo-ET☆61Updated this week
- ☆13Updated last week
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆32Updated last year
- cryolo documentation☆9Updated 10 months ago
- a tool for using surfaces to explore volumetric data in napari☆16Updated 3 months ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆23Updated 8 months ago
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆31Updated 6 months ago
- ☆46Updated this week
- ☆18Updated 2 weeks ago
- GPU-accelerated template matching for cryo-ET☆32Updated this week
- automated on-the-fly tilt-series alignment☆10Updated 3 years ago
- ☆45Updated 6 months ago
- Miscellaneous scripts for processing cryo-ET data☆12Updated this week
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆24Updated last month
- De novo analysis for cryo-electron tomography☆20Updated 3 months ago
- A somewhat cleaned-up version of the TOM toolbox for electron tomography☆16Updated 8 years ago
- Smart Parallel Automated Cryo Electron tomography☆21Updated this week
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆28Updated 11 months ago
- Parallel cryo electron tomography via beam image shift☆32Updated 2 months ago
- Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms☆39Updated last month