GrotjahnLab / surface_morphometricsLinks
Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
☆31Updated this week
Alternatives and similar repositories for surface_morphometrics
Users that are interested in surface_morphometrics are comparing it to the libraries listed below
Sorting:
- ☆34Updated 2 years ago
- a tool for using surfaces to explore volumetric data in napari☆19Updated 9 months ago
- membrane segmentation in 3D for cryo-ET☆85Updated 2 months ago
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆25Updated 11 months ago
- Jupyter-based tool for membrane segmentation manipulation☆10Updated 6 months ago
- cryo-EM tomogram simulator☆29Updated this week
- PIP package of cryoCARE☆45Updated last year
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆39Updated 2 years ago
- Singularity image for cryo-CARE☆37Updated 4 years ago
- SerialEM mdoc files as pandas dataframes☆14Updated last week
- ☆52Updated last year
- ☆14Updated 3 months ago
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆38Updated 6 months ago
- ☆61Updated 2 weeks ago
- Generates synthetic datasets for Cryo-Electron Tomography☆32Updated 5 months ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆29Updated 7 months ago
- autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.☆19Updated 6 months ago
- De novo analysis for cryo-electron tomography☆24Updated last year
- ☆19Updated last month
- automated on-the-fly tilt-series alignment☆11Updated 4 years ago
- GPU-accelerated template matching for cryo-ET☆49Updated 3 weeks ago
- Parallel cryo electron tomography via beam image shift☆40Updated last month
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆20Updated 2 weeks ago
- PyTom software for cryo-tomogram processing☆44Updated last month
- Fourier analysis and subtomogram averaging of heterogenic cylindrical structures☆16Updated last week
- IMOD model files as pandas dataframes in Python☆11Updated 7 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19Updated last year
- Scripts to make cryo-electron tomography a bit easier☆15Updated 6 months ago
- Self-supervised deep learning framework for CryoET analysis☆19Updated last week
- Self-supervised learning for isotropic cryoET reconstruction☆89Updated last year