Alternatives and similar repositories for surface_morphometrics

Users that are interested in surface_morphometrics are comparing it to the libraries listed below

• cellcanvas / surforama
  a tool for using surfaces to explore volumetric data in napari
  ☆19Updated 8 months ago
• CellArchLab / MemBrain
  ☆34Updated 2 years ago
• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆25Updated 10 months ago
• teamtomo / membrain-seg
  membrane segmentation in 3D for cryo-ET
  ☆84Updated 2 months ago
• bionanopatterning / scNodes
  ☆14Updated 3 months ago
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆39Updated last year
• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆14Updated 6 months ago
• juglab / cryoCARE_T2T
  Singularity image for cryo-CARE
  ☆37Updated 4 years ago
• juglab / cryoCARE_pip
  PIP package of cryoCARE
  ☆45Updated last year
• carsonpurnell / cryotomosim_CTS
  cryo-EM tomogram simulator
  ☆29Updated last week
• wan-lab-vanderbilt / TOMOMAN
  A set of MATLAB wrapper scripts to help with pre-processing of tomography data.
  ☆20Updated last year
• alisterburt / napari-mrcfile-reader
  Read MRC format image files into napari using the mrcfile package from CCP-EM
  ☆19Updated last year
• czimaginginstitute / AreTomo2
  ☆52Updated last year
• DeMarcoLab / autolamella
  autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
  ☆19Updated 5 months ago
• cellcanvas / cellcanvas-prototype
  A tool to support interactive machine learning for cryoET data
  ☆12Updated last year
• wan-lab-vanderbilt / STOPGAP
  STOPGAP is a MATLAB-based package for subtomogram averaging.
  ☆38Updated 5 months ago
• anmartinezs / polnet
  Generates synthetic datasets for Cryo-Electron Tomography
  ☆31Updated 5 months ago
• alisterburt / autoalign_dynamo
  automated on-the-fly tilt-series alignment
  ☆11Updated 4 years ago
• builab / subtomo2Chimera
  ☆19Updated last month
• anmartinezs / pyseg_system
  De novo analysis for cryo-electron tomography
  ☆24Updated last year
• hanjinliu / cylindra
  Fourier analysis and subtomogram averaging of heterogenic cylindrical structures
  ☆16Updated 2 weeks ago
• frosinastojanovska / cryosiam
  Self-supervised deep learning framework for CryoET analysis
  ☆18Updated last week
• phonchi / Computational-CryoET
  A curated list of awesome computational cryo-ET methods.
  ☆65Updated last month
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆11Updated 6 months ago
• tomotools / tomotools
  Scripts to make cryo-electron tomography a bit easier
  ☆15Updated 5 months ago
• brisvag / blik
  Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
  ☆28Updated last month
• warpem / warp
  ☆60Updated this week
• SBC-Utrecht / pytom-match-pick
  GPU-accelerated template matching for cryo-ET
  ☆48Updated last week
• rsanchezloayza / SUSAN
  ☆10Updated 2 weeks ago
• cryo-et-standards / cryoet-geometry
  A possible schema for cryoET geometry metadata
  ☆11Updated 5 months ago