brisvag / blikView external linksLinks
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
☆29Dec 1, 2025Updated 2 months ago
Alternatives and similar repositories for blik
Users that are interested in blik are comparing it to the libraries listed below
Sorting:
- a tool for using surfaces to explore volumetric data in napari☆19May 5, 2025Updated 9 months ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated 7 months ago
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated last week
- IMOD model files as pandas dataframes in Python☆11Jun 26, 2025Updated 7 months ago
- GPU-accelerated template matching for cryo-ET☆50Jan 9, 2026Updated last month
- ☆14Oct 17, 2025Updated 3 months ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆39Jan 30, 2024Updated 2 years ago
- ☆19Jan 23, 2026Updated 3 weeks ago
- ☆52Aug 19, 2024Updated last year
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆38Aug 6, 2025Updated 6 months ago
- Complementary tools for Relion tomo☆11Mar 9, 2024Updated last year
- A collaborative knowledge sharing platform for the cryo-ET community☆20Aug 7, 2024Updated last year
- ☆25Dec 16, 2025Updated last month
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆41Mar 11, 2025Updated 11 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated last year
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆20Jan 23, 2026Updated 3 weeks ago
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆31Jul 17, 2025Updated 6 months ago
- Singularity image for cryo-CARE☆37Jan 7, 2022Updated 4 years ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆29Jun 29, 2025Updated 7 months ago
- cryo-ET particle picking by representation and metric learning☆41Nov 24, 2025Updated 2 months ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆25Dec 31, 2025Updated last month
- Generates synthetic datasets for Cryo-Electron Tomography☆32Aug 13, 2025Updated 6 months ago
- membrane segmentation in 3D for cryo-ET☆85Nov 19, 2025Updated 2 months ago
- A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.☆16Mar 4, 2023Updated 2 years ago
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆21Jan 29, 2025Updated last year
- Self-supervised learning for isotropic cryoET reconstruction☆89Dec 29, 2024Updated last year
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆25Mar 5, 2025Updated 11 months ago
- structural heterogeneity analysis for cryo-ET subtomogram☆10Feb 5, 2026Updated last week
- Two-Dimensional Template Matching implemented in Python☆13Feb 6, 2026Updated last week
- A software for membrane signal subtraction to facilitate high-resolution cryo-EM reconstruction of membrane proteins embedded in their na…☆12Sep 4, 2025Updated 5 months ago
- Transformer And Rapid Dimensionless Instance Segmentation☆20Dec 13, 2025Updated 2 months ago
- PyTom software for cryo-tomogram processing☆44Jan 5, 2026Updated last month
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆32Feb 5, 2026Updated last week
- ☆46Mar 13, 2025Updated 11 months ago
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆19Jul 28, 2023Updated 2 years ago
- ☆16Feb 4, 2017Updated 9 years ago
- A CTF Simulation Web App☆13Aug 6, 2025Updated 6 months ago
- ☆10Jan 6, 2026Updated last month