martinsch / pgmlink
pgmLink - A Tracking-by-Assignment Software
☆16Updated 8 years ago
Alternatives and similar repositories for pgmlink:
Users that are interested in pgmlink are comparing it to the libraries listed below
- A nifty library for graph based image segmentation.☆43Updated 3 months ago
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Updated 7 years ago
- Solving LPs with convergent message passing☆23Updated 6 years ago
- ☆49Updated 6 years ago
- The Hungarian-BP code in Paper "Pairwise Matching Through Max-Weight Bipartite Belief Propagation"☆18Updated 8 years ago
- ☆3Updated 7 years ago
- Rhoana - Dense Automated Neuron Annotation pipeline☆28Updated 7 years ago
- Algorithm for round cells identification in the brightfield microscopy images.☆21Updated last year
- A general illumination correction method for optical microscopy.☆37Updated 3 years ago
- Automatic segmentation of electron microscopy volumes☆76Updated 4 years ago
- CPAB Transformations: finite-dimensional spaces of simple, fast, and highly-expressive diffeomorphisms derived from parametric, continuou…☆23Updated 4 years ago
- ☆40Updated 4 years ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆40Updated 9 months ago
- single particle tracking code for colloidal research☆14Updated 11 years ago
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆43Updated 7 months ago
- Distributed segmentation for bio-image-analysis☆36Updated 6 months ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆38Updated 2 years ago
- A collection of tools for the analysis of biological data☆11Updated 8 years ago
- Code for the paper "An Improved Joint Optimization of Multiple Level Set Functions for the Segmentation of Overlapping Cervical Cells" pu…☆30Updated 8 years ago
- Automatic ROI Detection☆19Updated 9 years ago
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Updated 3 years ago
- Tool for graph-based image segmentation and analysis☆21Updated 7 years ago
- ☆11Updated 4 years ago
- C and NVidia CUDA code for multi-view deconvolution☆11Updated 8 years ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 4 years ago
- Interactive Learning and Segmentation Toolkit☆24Updated 12 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated last year
- A Deep Architecture for Synapse Detection in Multiplexed Fluorescence Images☆14Updated 5 years ago