RTLucassen / slidesegmenterView external linksLinks
A Python package for tissue and pen marking segmentation on low-magnification (1.25x) whole slide images.
☆16Feb 2, 2026Updated last week
Alternatives and similar repositories for slidesegmenter
Users that are interested in slidesegmenter are comparing it to the libraries listed below
Sorting:
- COntrastive Biomarker Representation Alignment (COBRA) [CVPR25]☆22Oct 1, 2025Updated 4 months ago
- A multilabel lymph node segmentation dataset from contrast CT☆26Jul 29, 2025Updated 6 months ago
- Python package for reading DICOM WSI file sets.☆47Dec 31, 2025Updated last month
- Efficient Approach for Guided Local Examination in Digital Pathology☆32May 4, 2025Updated 9 months ago
- PathBench-MIL: A comprehensive, flexible Benchmarking / AutoML framework for multiple instance learning in Histopathology☆28Jan 9, 2026Updated last month
- ☆32Nov 1, 2022Updated 3 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Jan 25, 2024Updated 2 years ago
- WSICS☆30Apr 19, 2019Updated 6 years ago
- ☆12May 24, 2023Updated 2 years ago
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆94May 23, 2023Updated 2 years ago
- TU/e 8P361 Project Imaging course materials.☆22Feb 7, 2025Updated last year
- Mock of streamlit to allow unit tests☆10Aug 4, 2022Updated 3 years ago
- A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.☆12Apr 9, 2022Updated 3 years ago
- Synthetic histology using GANs, for deep learning model explainability and trainee education.☆16Jan 5, 2024Updated 2 years ago
- A tool to align your multi-monitor setup perfectly on Windows☆12Feb 20, 2023Updated 2 years ago
- A Python package for plotting Kaplan-Meier survival curves☆11Jan 5, 2025Updated last year
- ☆46Jan 10, 2022Updated 4 years ago
- ☆13Aug 16, 2024Updated last year
- Code for the paper "Model Agnostic Interpretability for Multiple Instance Learning".☆13Jan 28, 2022Updated 4 years ago
- ☆15Jul 26, 2022Updated 3 years ago
- This repository contains the code of Van De Vyver, Gilles, et al. "Towards Robust Cardiac Segmentation using Graph Convolutional Networks…☆19Feb 27, 2025Updated 11 months ago
- Segment Anything Model (SAM) interactive demo with OpenVINO☆13Jun 5, 2024Updated last year
- ☆14Nov 5, 2025Updated 3 months ago
- CBMIL: Clustering-based Multi-instance Learning Network for Whole Slide Image Classification☆11Mar 5, 2023Updated 2 years ago
- An implementation of Compositional Attention: Disentangling Search and Retrieval by MILA☆14Jun 1, 2022Updated 3 years ago
- QuPath extension to work with images through OMERO's web API☆10May 31, 2024Updated last year
- Pytorch implementation of Google TCAV☆10Jan 11, 2019Updated 7 years ago
- This is a joint project between Helmholtz Imaging (located at DKFZ) and Lin Yang and Otmar Schmid (Helmholtz Munich).☆11Nov 6, 2024Updated last year
- Run Deekseek LLM model locally with Ollama, deepseek-r1:1.5b, and React☆11Jan 29, 2025Updated last year
- LDM-Morph: Latent diffusion model guided deformable image registration☆13Jan 19, 2025Updated last year
- ☆13Jun 24, 2024Updated last year
- OpenVINO LLM Benchmark☆11Dec 7, 2023Updated 2 years ago
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 5 months ago
- To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory avail…☆101Sep 8, 2023Updated 2 years ago
- Machine learning methods for spatially resolved transcriptomics with histology images: a collection of related resources.☆10Mar 22, 2022Updated 3 years ago
- Prostate gland segmentation with deep Convolutional Neural Networks☆10May 29, 2017Updated 8 years ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- ThrustCurve.org third revision☆13Feb 1, 2026Updated last week
- ☆14Aug 10, 2018Updated 7 years ago