Alternatives and similar repositories for plantit:

Users that are interested in plantit are comparing it to the libraries listed below

• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• Gregor-Mendel-Institute / aradeepopsis
  A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
  ☆41Updated 2 years ago
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 3 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 years ago
• pamelarussell / github-bioinformatics
  Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"
  ☆31Updated 5 years ago
• cyverse / docker-builds
  A place to put docker build files
  ☆13Updated last year
• kuanrongchan / STAGES
  ☆33Updated 8 months ago
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated 2 years ago
• b2slab / FELLA
  FELLA: an R package for Metabolomics data enrichment through diffusion
  ☆22Updated 4 years ago
• cwieder / py-ssPA
  Single sample pathway analysis tools for omics data
  ☆12Updated 3 months ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• biswapriyamisra / metabolomics
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Updated 4 years ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆32Updated 7 months ago
• SysMedOs / LipidLynxX
  LipidLynxX provides the possibility to convert, cross-match, and link various lipid annotations to the tools supporting lipid ontology, …
  ☆14Updated 2 years ago
• Computational-Plant-Science / DIRT
  Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
  ☆25Updated last year
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆16Updated 4 months ago
• singularityhub / singularity-deploy
  Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
  ☆16Updated last year
• aberHRML / metabolighteR
  R Interface to the Metabolights REST API
  ☆10Updated 11 months ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆17Updated 5 months ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated last year
• boutroslab / HTSvis
  A web app for exploratory data analysis of high-throughput screens (HTS)
  ☆17Updated 6 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 4 years ago
• ISA-tools / mzml2isa
  Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
  ☆12Updated 5 months ago
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆12Updated 6 years ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆20Updated 4 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 3 years ago
• bihealth / sodar-server
  SODAR: System for Omics Data Access and Retrieval
  ☆16Updated this week