Alternatives and similar repositories for plantit

Users that are interested in plantit are comparing it to the libraries listed below

• cole-trapnell-lab / cicero
  ☆12Updated last year
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆40Updated 3 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• aritra90 / TeraPCA
  TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…
  ☆15Updated 3 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated 2 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆33Updated last year
• suinleelab / DeepProfile
  DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression sa…
  ☆19Updated 7 years ago
• yangzi4 / iNMF
  Source code for integrative nonnegative matrix factorization
  ☆19Updated 7 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated 3 weeks ago
• datarail / gr_metrics
  ☆15Updated 2 years ago
• sirajulsalekin / DeepSNR
  Base-pair resolution detection of transcription factor binding site by deep deconvolutional network
  ☆10Updated 7 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• CamaraLab / TDA-TCGA
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
  ☆10Updated 3 years ago
• Teichlab / covid19_MS1
  Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".
  ☆14Updated 4 years ago
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 4 years ago
• viash-io / viash
  script + metadata = standalone component
  ☆43Updated last week
• pmelsted / AM_2024
  Analaysis for the batch correction paper
  ☆10Updated 4 months ago
• theorod93 / sCCA
  Sparse Canonical Correlation Analysis (sCCA)
  ☆20Updated 3 years ago
• yeminlan / ADEpigenetics
  Main codes for AD epigenetics paper by Nativio et al.
  ☆11Updated 5 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated last month
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated last week
• ccshao / nimfa
  nimfa - A Python Library for Nonnegative Matrix Factorization Techniques
  ☆10Updated 7 years ago
• jolespin / soothsayer
  High-level analysis package for (bio-)informatics
  ☆10Updated last year