Alternatives and similar repositories for scPCA

Users that are interested in scPCA are comparing it to the libraries listed below

• stephenslab / flashr
  R package for Empirical Bayes Factor Analysis.
  ☆52Updated last year
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆38Updated 7 years ago
• kisungyou / Rdimtools
  Dimension Reduction and Estimation Methods
  ☆55Updated 3 months ago
• KlugerLab / oocPCA
  Out-of-Core Principal Component Analysis
  ☆19Updated 8 years ago
• AlineTalhouk / diceR
  Diverse Cluster Ensemble in R
  ☆39Updated 6 months ago
• imbs-hl / survivalsvm
  Survival Support Vector Analysis
  ☆18Updated 8 months ago
• maiermarco / DirichletReg
  ☆13Updated 4 years ago
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆84Updated this week
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• rcannood / princurve
  Fits a Principal Curve in Arbitrary Dimension ⤵
  ☆44Updated 11 months ago
• lucylgao / clusterpval
  ☆17Updated 2 years ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆82Updated last year
• renozao / NMF
  NMF: A Flexible R package for Nonnegative Matrix Factorization
  ☆153Updated 2 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• rikenbit / nnTensor
  R package for Non-negative Tensor Decomposition
  ☆20Updated last year
• crj32 / M3C
  Monte Carlo Reference-based Consensus Clustering
  ☆36Updated 5 years ago
• zdebruine / RcppML
  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
  ☆111Updated last year
• linqiaozhi / DR_benchmark_initialization
  ☆15Updated 6 years ago
• jchiquet / aricode
  R package for computation of (adjusted) rand-index and other such scores
  ☆27Updated last month
• MSKCC-Epi-Bio / gnomeR
  Package to wrangle and visualize genomic data in R
  ☆26Updated 2 months ago
• timothy-barry / ondisc
  Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.
  ☆11Updated last year
• LTLA / TileDBArray
  Clone of the Bioconductor repository for the TileDBArray package.
  ☆11Updated 6 months ago
• jlmelville / smallvis
  R package for dimensionality reduction of small datasets
  ☆69Updated last month
• Bioconductor / DelayedArray
  A unified framework for working transparently with on-disk and in-memory array-like datasets
  ☆27Updated 2 months ago
• gforge / forestplot
  Advanced forest plots in R using grid graphics
  ☆49Updated 6 months ago
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆24Updated last year
• mhahsler / seriation
  Infrastructure for Ordering using Seriation - R Package
  ☆83Updated 2 months ago
• hredestig / pcaMethods
  Perform PCA on data with missing values in R
  ☆53Updated 2 years ago
• Bioconductor / TENxBrainAnalysis
  R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics
  ☆12Updated 2 years ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 8 months ago