CDCgov / MicrobeTraceLinks
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
☆95Updated last week
Alternatives and similar repositories for MicrobeTrace
Users that are interested in MicrobeTrace are comparing it to the libraries listed below
Sorting:
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated 2 months ago
- Reconstruction of transmission trees using genomic data☆66Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 5 months ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆58Updated 2 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Updated 2 weeks ago
- ☆74Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 2 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated last week
- An open database of vertebrate-virus interactions☆41Updated 2 weeks ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆22Updated last month
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- Collection template and associated materials for SARS-CoV-2 metadata☆35Updated 2 years ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆87Updated this week
- ☆50Updated 3 years ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆16Updated 2 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated last week
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆93Updated this week
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 2 weeks ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Updated 3 years ago
- ☆12Updated 2 years ago
- Fungal Genome Mapping Pipeline☆18Updated 6 years ago
- resources for bioinformatics education☆94Updated 6 months ago