CDCgov / MicrobeTraceLinks
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
☆93Updated this week
Alternatives and similar repositories for MicrobeTrace
Users that are interested in MicrobeTrace are comparing it to the libraries listed below
Sorting:
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆34Updated 2 months ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆54Updated 2 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated this week
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 3 weeks ago
- ☆18Updated last week
- Reconstruction of transmission trees using genomic data☆62Updated last year
- Collection template and associated materials for SARS-CoV-2 metadata☆35Updated last year
- Phylogenetics between and within hosts at once, all along the genome.☆48Updated 8 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆15Updated 2 years ago
- An open database of vertebrate-virus interactions☆40Updated last week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated last month
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆21Updated 6 years ago
- ☆49Updated 3 years ago
- Tutorial on using E-utilities☆22Updated 2 months ago
- Visualization of the pan-genome output by panX☆63Updated 2 years ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 9 months ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆74Updated this week
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆52Updated this week
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 3 years ago
- ☆14Updated 6 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Static website for the PH4AGE alliance☆12Updated last year
- Harmonization of AMR predictor tool outputs☆25Updated 4 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆36Updated 3 weeks ago
- R We There Yet?☆30Updated 2 months ago