The Visualization Multitool for Molecular Epidemiology and Bioinformatics
☆99Apr 27, 2026Updated this week
Alternatives and similar repositories for MicrobeTrace
Users that are interested in MicrobeTrace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for the Tree-Based Scan Statistic☆14Updated this week
- React component for visualizing your data on a map of the United States based off work done for the CDC☆10Dec 14, 2020Updated 5 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated last month
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 9 months ago
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 4 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆62Updated this week
- ☆27Aug 2, 2023Updated 2 years ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- ☆21Apr 2, 2025Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- ☆38Jan 12, 2026Updated 3 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- ☆30Mar 6, 2025Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆44Updated this week
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 4 months ago
- ☆13Nov 1, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.☆41May 19, 2025Updated 11 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆92Mar 10, 2026Updated last month
- UPHL's Reference Free Pipeline☆28Apr 14, 2026Updated 2 weeks ago
- VAPiD: Viral Annotation and Identification Pipeline☆56May 29, 2024Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- Bioinformatics Pipeline and Visualization resources☆65Aug 30, 2024Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆36Jun 30, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is the repository for the openCDC web site. Entire site is generated from data files describing CDC Open Technology types for data, …☆18Mar 21, 2024Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆94Mar 30, 2026Updated last month
- A curated database of completed assemblies with taxonomy IDs☆51Mar 21, 2026Updated last month
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆53Apr 22, 2026Updated last week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆103Updated this week