The Visualization Multitool for Molecular Epidemiology and Bioinformatics
☆103Aug 7, 2026Updated this week
Alternatives and similar repositories for MicrobeTrace
Users that are interested in MicrobeTrace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- React component for visualizing your data on a map of the United States based off work done for the CDC☆10Dec 14, 2020Updated 5 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 5 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- Software for the Tree-Based Scan Statistic☆17Updated this week
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆55Jul 24, 2025Updated last year
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆64Updated this week
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 5 years ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆110Updated this week
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- ☆27Aug 2, 2023Updated 3 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated last month
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Updated this week
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.☆41Jun 9, 2026Updated 2 months ago
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- ☆30Mar 6, 2025Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- This is the repository for the openCDC web site. Entire site is generated from data files describing CDC Open Technology types for data, …☆18Mar 21, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Bioinformatics Pipeline and Visualization resources☆65Aug 30, 2024Updated last year
- ☆38Jan 12, 2026Updated 6 months ago
- ☆13Nov 1, 2022Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆44Dec 11, 2020Updated 5 years ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Jul 11, 2026Updated last month
- UPHL's Reference Free Pipeline☆29Updated this week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆36Jun 30, 2024Updated 2 years ago
- Standard database for the TBProfiler tool☆30Jun 23, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A curated database of completed assemblies with taxonomy IDs☆53Jun 7, 2026Updated 2 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- VAPiD: Viral Annotation and Identification Pipeline☆57May 29, 2024Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Updated this week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆38Updated this week
- ☆21Apr 2, 2025Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago