pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction
☆28Apr 24, 2024Updated 2 years ago
Alternatives and similar repositories for EquiPNAS
Users that are interested in EquiPNAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- E(3) equivariant graph neural network for PPI site prediction☆11Sep 18, 2023Updated 3 years ago
- wwPDB PDBx/mmCIF Dictionary☆10Sep 5, 2026Updated 2 weeks ago
- Identifying Protein-DNA binding sites based on multi-view graph embedding fusion☆12Sep 20, 2024Updated 2 years ago
- https://grasp.ufv.br/☆17Jul 6, 2023Updated 3 years ago
- ☆25Mar 15, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- ☆57Aug 3, 2024Updated 2 years ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆47Oct 17, 2024Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆63Aug 3, 2024Updated 2 years ago
- ☆13Oct 19, 2023Updated 2 years ago
- ☆44Jul 7, 2024Updated 2 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Updated this week
- JavaScript based molecule structure editor☆15Oct 14, 2009Updated 16 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Single-sequence protein-RNA complex structure prediction with biological language models☆18Sep 23, 2025Updated last year
- ☆10Aug 20, 2023Updated 3 years ago
- ☆33Aug 12, 2024Updated 2 years ago
- ☆14Dec 10, 2021Updated 4 years ago
- SpatialPPIv2: Enhancing protein–protein interaction prediction through graph neural networks with protein language models.☆28Jan 8, 2026Updated 8 months ago
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Jun 6, 2024Updated 2 years ago
- "Applying Regularized Schrödinger-Bridge-Based Stochastic Process in Generative Modeling"☆11Aug 16, 2022Updated 4 years ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- ☆67Jun 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TMol - Rosetta on the GPU☆93Updated this week
- Geometry-aware protein binding site predictor☆31Aug 29, 2024Updated 2 years ago
- ☆23Sep 14, 2023Updated 3 years ago
- GUI_Artistic_Signature艺术签名GUI桌面程序☆12Oct 20, 2018Updated 7 years ago
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆56Apr 20, 2025Updated last year
- A Python 3 version of the protein descriptor package propy☆48Sep 13, 2026Updated last week
- Calculation of interatomic interactions in molecular structures☆93Mar 5, 2026Updated 6 months ago
- The embedded Python Molecular Viewer (ePMV) runs molecular modeling software directly inside of professional 3D animation applications (h…☆19Sep 12, 2019Updated 7 years ago
- Code of "A Geometric Perspective on Variational Autoencoders" (NeurIPS 2022)☆16Nov 19, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph transport network (GTN), as proposed in "Scalable Optimal Transport in High Dimensions for Graph Distances, Embedding Alignment, an…☆15Apr 26, 2023Updated 3 years ago
- ☆13May 18, 2020Updated 6 years ago
- Tutorials for multimodal omics data analysis☆20Feb 28, 2025Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Dec 11, 2023Updated 2 years ago
- ☆57Aug 28, 2024Updated 2 years ago
- ChebLieNet, a spectral graph neural network turned equivariant by Riemannian geometry on Lie groups.☆14Aug 20, 2024Updated 2 years ago
- Energy Based Models are a quite novel technique for density estimation. In this university project I explore this new research topic and …☆16Jul 6, 2021Updated 5 years ago