pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction
☆29Apr 24, 2024Updated 2 years ago
Alternatives and similar repositories for EquiPNAS
Users that are interested in EquiPNAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying Protein-DNA binding sites based on multi-view graph embedding fusion☆12Sep 20, 2024Updated 2 years ago
- E(3) equivariant graph neural network for PPI site prediction☆11Sep 18, 2023Updated 3 years ago
- ☆25Mar 15, 2024Updated 2 years ago
- Protein-protein interacting site predictor using deep graph convolutional network☆11Jan 3, 2023Updated 3 years ago
- Segmentation of nucleic acid binding interface on protein surface with geometric deep learning☆15May 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆17Nov 28, 2023Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆63Aug 3, 2024Updated 2 years ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆46Oct 17, 2024Updated 2 years ago
- ☆57Aug 3, 2024Updated 2 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- ☆45Jul 7, 2024Updated 2 years ago
- reimplementation of mfDCA in python☆12Jul 7, 2019Updated 7 years ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆37Jul 4, 2025Updated last year
- ☆13Oct 19, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- JavaScript based molecule structure editor☆15Oct 14, 2009Updated 17 years ago
- init commit☆16Oct 31, 2023Updated 3 years ago
- Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]☆19Mar 9, 2021Updated 5 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆26Oct 15, 2026Updated 2 weeks ago
- ☆10Aug 20, 2023Updated 3 years ago
- SpatialPPIv2: Enhancing protein–protein interaction prediction through graph neural networks with protein language models.☆28Jan 8, 2026Updated 9 months ago
- ☆14Dec 10, 2021Updated 4 years ago
- ☆31Aug 12, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Jun 8, 2023Updated 3 years ago
- Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".☆19May 7, 2024Updated 2 years ago
- Predicting Synthesis Recipes of Inorganic Crystal Materials using Elementwise Template Formulation☆11Apr 19, 2024Updated 2 years ago
- "Applying Regularized Schrödinger-Bridge-Based Stochastic Process in Generative Modeling"☆11Aug 16, 2022Updated 4 years ago
- ☆67Jun 14, 2025Updated last year
- ADEPT: Automated molecular Dynamics Engine for Polymer simulaTions☆17Jun 27, 2026Updated 4 months ago
- A Machine Learning Model to Predict Phase Separation Driving Residues☆13Jul 12, 2024Updated 2 years ago
- ☆10Mar 26, 2025Updated last year
- GUI_Artistic_Signature艺术签名GUI桌面程序☆12Oct 20, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆177Oct 11, 2023Updated 3 years ago
- A Modular Architecture for Deep Learning Systems☆56May 23, 2025Updated last year
- Code of "A Geometric Perspective on Variational Autoencoders" (NeurIPS 2022)☆16Nov 19, 2024Updated last year
- ☆11Dec 13, 2022Updated 3 years ago
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆56Apr 20, 2025Updated last year