Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.
☆11Jul 15, 2024Updated last year
Alternatives and similar repositories for tutorial_dcTMD
Users that are interested in tutorial_dcTMD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A conda-smithy repository for ambertools.☆11Mar 17, 2026Updated 3 weeks ago
- The Density Functional Theory for Electrolyte Solutions☆10Sep 13, 2022Updated 3 years ago
- Jupyter book and content for "Machine Learning for Molecular Dynamics" course☆13Apr 7, 2022Updated 4 years ago
- ☆12Jun 3, 2019Updated 6 years ago
- SPRINT: Scoring PRotein INTeractions☆16Aug 11, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Jul 30, 2019Updated 6 years ago
- ☆33Sep 23, 2023Updated 2 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆13Dec 7, 2021Updated 4 years ago
- Open Source Antibiotics Series 2☆10Jan 23, 2023Updated 3 years ago
- dockECR: open consensus docking and ranking protocol for virtual screening of small molecules☆27Oct 15, 2021Updated 4 years ago
- This repository contains the implementation of a novel machine learning classifier trained on the Dataset of Congruent Inhibitors and Dec…☆22Sep 8, 2020Updated 5 years ago
- ☆27Oct 30, 2023Updated 2 years ago
- Pytorch implementation of BionoiNet, which is a deep learning-based software to classify ligand-binding sites.☆20Jun 22, 2021Updated 4 years ago
- Multi-Level DBSCAN: A Hierarchical Density-Based Clustering Method for Analyzing Molecular Dynamics Trajectories☆13Dec 6, 2020Updated 5 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Python package for virtual screening of generated molecules using autodock-vina and tensorflow☆14Mar 22, 2021Updated 5 years ago
- Computation of the drug-target relative residence times from RAMD simulations☆21Aug 29, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- protein structure prediction with precision☆27May 14, 2024Updated last year
- MD trajectory analysis using protein-ligand Interaction Fingerprints☆76Sep 23, 2025Updated 6 months ago
- MD-ligand-receptor is a bioinformatics pipeline written in Python for analyzing non-covalent ligand-receptor interactions in 3D structure…☆11Jun 18, 2023Updated 2 years ago
- Some useful VMD scrpits☆10May 24, 2016Updated 9 years ago
- ☆16Jul 26, 2024Updated last year
- A simple yet versatile toolkit to setup quantum mechanical/molecular mechanical (QM/MM) calculations from molecular dynamics trajectories…☆30Jan 23, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Get access to our MD data files.☆31Nov 22, 2023Updated 2 years ago
- Repository for Chemical Perception Sampling Tools☆21Aug 13, 2024Updated last year
- Different run and analysis scripts as described in the research guides.☆14Jul 5, 2022Updated 3 years ago
- Prediction by Partial Matching☆16Apr 3, 2020Updated 6 years ago
- Learning Molecular Dynamics with Simple Language Model built upon Long Short-Term Memory Neural Network☆44Jun 23, 2022Updated 3 years ago
- A Set of Tutorials for the LAMMPS Simulation Package☆42Oct 1, 2025Updated 6 months ago
- Python scripts for molecular docking of molecules vs DUDE protein targets, using Vina☆23Apr 20, 2020Updated 5 years ago
- Parallel Molecular Docking using PLANTS software☆14Dec 8, 2024Updated last year
- Perform polymerization and crosslinking in MARTINI coarse-grained forcefield using GROMACS MD package☆28Jan 21, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆14Jul 7, 2025Updated 9 months ago
- Reusability report of scBERT☆16Jul 14, 2024Updated last year
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆69Jun 1, 2025Updated 10 months ago
- PCA and normal mode analysis of proteins☆20May 16, 2024Updated last year
- Tutorials for DeepModeling projects.☆16Mar 11, 2026Updated last month
- Testing module for Galaxy workflows☆10Jul 31, 2018Updated 7 years ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆60Aug 2, 2025Updated 8 months ago