mikeusru / Braintown
☆12Updated 5 years ago
Alternatives and similar repositories for Braintown:
Users that are interested in Braintown are comparing it to the libraries listed below
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- The ImageJ framework for quantification of neuronal anatomy☆44Updated this week
- Generate markdown notebooks from ImageJ Macro☆23Updated 3 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆15Updated 2 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last week
- ☆18Updated 2 years ago
- ☆14Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- Serial-section automated anatomy extension for ScanImage☆12Updated this week
- Z-stack Depth Colorcode ImageJ FIJI plugin☆23Updated 3 years ago
- Python scripts library for Aivia. Ask your questions on the forum >>☆15Updated 2 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆20Updated 2 years ago
- motion correction☆16Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆52Updated 8 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- ☆45Updated 4 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 4 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆89Updated 2 months ago
- Tools for distributed alignment of massive images☆78Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆20Updated this week
- Flow-Registration toolbox for 2P motion compensation☆21Updated 5 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 3 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated last week
- Extract regions of interest based on correlated pixel intensity☆24Updated 7 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ☆21Updated 5 months ago