AG-Boerries / MIRACUM-PipeLinks
Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.
☆18Updated last year
Alternatives and similar repositories for MIRACUM-Pipe
Users that are interested in MIRACUM-Pipe are comparing it to the libraries listed below
Sorting:
- Rareservoir Database Tools☆16Updated 2 years ago
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆35Updated last week
- Clinical interpretation of somatic mutations in cancer☆50Updated 10 months ago
- python module for querying the vicc knowledgebase integration datastore☆11Updated 2 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆13Updated 2 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆66Updated 2 weeks ago
- ☆23Updated 7 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated 7 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- ☆51Updated 6 years ago
- Secure and federated genome-wide association studies☆17Updated 10 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 4 months ago
- Splits fastq files evenly☆23Updated 5 years ago
- AI-MARRVEL (AIM) is an AI system for rare genetic disorder diagnosis☆19Updated last month
- A flexible framework for nucleosome profiling of cell-free DNA☆28Updated 2 years ago
- From QC to summary statistics☆17Updated 5 years ago
- Comprehensive analysis of small RNA sequencing data☆34Updated 8 months ago
- Copy Number Variations (CNV) Simulator☆11Updated 7 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆41Updated 3 years ago
- ☆38Updated 5 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- A user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Updated 3 years ago
- Collection of fragmentomic analysis scripts☆12Updated last year
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆43Updated last year
- Explore the cancer relevance of your gene list☆52Updated last month
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated 2 months ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 5 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Updated 2 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆89Updated 4 months ago