AG-Boerries / MIRACUM-Pipe
Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.
☆16Updated 9 months ago
Alternatives and similar repositories for MIRACUM-Pipe:
Users that are interested in MIRACUM-Pipe are comparing it to the libraries listed below
- Rareservoir Database Tools☆14Updated 2 years ago
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆31Updated 8 months ago
- Clinical interpretation of somatic mutations in cancer☆44Updated last month
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆25Updated 2 years ago
- Explore the cancer relevance of your gene list☆51Updated last month
- The analysis repository for the Open Pediatric Cancer Project☆22Updated last week
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆14Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆43Updated 6 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 8 months ago
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆19Updated last week
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆25Updated this week
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 5 years ago
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- ☆40Updated 6 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Easy Copy Number !☆21Updated 3 years ago
- DNA copy number detection from off-target sequence data☆31Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 3 months ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆11Updated 2 years ago