Alternatives and similar repositories for DeepMHCII

Users that are interested in DeepMHCII are comparing it to the libraries listed below

• debbiemarkslab / nanobody-polyreactivity

  View on GitHub
  Polyreactivity Website
  ☆21Jun 26, 2023Updated 2 years ago
• liulizhi1996 / HPOFiller

  View on GitHub
  The implementation of paper "HPOFiller: identifying missing protein-phenotype associations by graph convolutional network".
  ☆12Dec 24, 2020Updated 5 years ago
• KarchinLab / mhcnuggets

  View on GitHub
  MHC Class I and Class II neoantigen binding prediction
  ☆34Jul 23, 2025Updated 6 months ago
• gopuvenkat / MHCAttnNet

  View on GitHub
  MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles
  ☆30Feb 14, 2021Updated 4 years ago
• yourh / DeepGraphGO

  View on GitHub
  DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction
  ☆35Jul 28, 2021Updated 4 years ago
• similab / FSTest

  View on GitHub
  An efficient tool for cross-population fixation index estimation on variant call format files
  ☆11Jan 12, 2024Updated 2 years ago
• gilbutITbook / 080311

  View on GitHub
  ☆11Nov 17, 2023Updated 2 years ago
• xin-huang / sstar

  View on GitHub
  Detecting Archaic Introgression from Population Genetic Data with S*
  ☆10Jan 28, 2026Updated 2 weeks ago
• GCS-ZHN / socube

  View on GitHub
  A simple python package for doublet detection in scRNA-seq data
  ☆11Mar 30, 2023Updated 2 years ago
• hitaandrea / MGcount

  View on GitHub
  MGcount github repository
  ☆14Jan 19, 2023Updated 3 years ago
• Jerome-Alvarez / TEMPRO

  View on GitHub
  nanobody melting temperature prediction using protein embeddings
  ☆11Feb 24, 2025Updated 11 months ago
• shapirolab / clineage

  View on GitHub
  ☆11Apr 21, 2023Updated 2 years ago
• jeetsukumaran / delineate

  View on GitHub
  Package for species delimitation analysis
  ☆11Jan 7, 2025Updated last year
• jfnavarro / hla_pipeline

  View on GitHub
  DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
  ☆11Jul 8, 2021Updated 4 years ago
• miaomiaoge / CeFish

  View on GitHub
  集鱼类拍照、PIT ID识别、体长、体宽、眼宽、鳍长等15个体型特征以及体重信息收集和记录于一体的软件——测鱼宝
  ☆21Mar 5, 2025Updated 11 months ago
• mapequation / bioregions

  View on GitHub
  Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions
  ☆12Dec 18, 2025Updated last month
• huangkang1987 / vcfpop

  View on GitHub
  ☆12Feb 16, 2025Updated 11 months ago
• revbayes / RevGadgets

  View on GitHub
  Postprocessing gadgets for output generated by RevBayes
  ☆14Feb 6, 2026Updated last week
• GMELab / GraBLD

  View on GitHub
  an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.
  ☆10Apr 9, 2019Updated 6 years ago
• Caetanods / ratematrix

  View on GitHub
  Bayesian estimation of the evolutionary rate matrix.
  ☆10Dec 8, 2025Updated 2 months ago
• yoheirosen / sublinear-Li-Stephens

  View on GitHub
  Calculates the probability of a haplotype given a population reference panel
  ☆12Dec 9, 2024Updated last year
• QuentinRougemont / treemix_workflow

  View on GitHub
  ☆11Dec 1, 2020Updated 5 years ago
• nsmro / synphoni

  View on GitHub
  SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…
  ☆12May 7, 2023Updated 2 years ago
• jdalapicolla / LanGen_pipeline_version2

  View on GitHub
  Scripts in R for Landscape Genomics Analyses v.2
  ☆10Feb 17, 2023Updated 2 years ago
• HMPNK / CSA2.6

  View on GitHub
  Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes
  ☆10Oct 16, 2024Updated last year
• pinbo / msa2snp

  View on GitHub
  SNP and indel calls from multiple sequence alignment (MSA)
  ☆13Nov 11, 2022Updated 3 years ago
• wangyayaya / PhyloForge

  View on GitHub
  PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals
  ☆10May 17, 2024Updated last year
• kliment-olechnovic / ftdmp

  View on GitHub
  FTDMP is a software system for running docking experiments and scoring/ranking multimeric models.
  ☆13Oct 20, 2025Updated 3 months ago
• bodenlab / GRASP

  View on GitHub
  Graphical Representation of Ancestral Sequence Predictions
  ☆12Mar 6, 2023Updated 2 years ago
• ZhiGroup / Syllable-PBWT

  View on GitHub
  ☆12Aug 23, 2023Updated 2 years ago
• lugiavn / generalization-dml

  View on GitHub
  Generalization in Metric Learning: Should the Embedding Layer be the Embedding Layer?
  ☆11Jan 3, 2019Updated 7 years ago
• piercelab / tcrmodel2

  View on GitHub
  ☆46Mar 26, 2025Updated 10 months ago
• hotrush / Webshotter

  View on GitHub
  Website's screenshots with PHP and PhantomJS
  ☆10Dec 27, 2017Updated 8 years ago
• ThomasDOtto / ratt

  View on GitHub
  Rapid Annotation Transfer Tool
  ☆10May 21, 2025Updated 8 months ago
• tatonetti-lab / h2o

  View on GitHub
  Observational Heritability
  ☆10Dec 14, 2022Updated 3 years ago
• loudKode / Unofficial-VirusTotal-Client

  View on GitHub
  Analyze suspicious files and URLs to detect types of malware
  ☆11May 14, 2020Updated 5 years ago
• JFFleming / BOSTIn

  View on GitHub
  BOSTIn is a new, user-friendly phylogenetic artifact identification package.
  ☆11Jan 20, 2026Updated 3 weeks ago
• morganmuell / brownlab-workflow-mcmctree

  View on GitHub
  Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.
  ☆10Jun 19, 2020Updated 5 years ago
• raphael-group / multibreak-sv

  View on GitHub
  MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…
  ☆12Jul 19, 2016Updated 9 years ago