Improve the accuracy of database search by using BERT to embed MS/MS reasonably
☆20Oct 15, 2024Updated last year
Alternatives and similar repositories for MSBERT
Users that are interested in MSBERT are comparing it to the libraries listed below
Sorting:
- ☆11Nov 30, 2024Updated last year
- ☆12Jan 16, 2025Updated last year
- ☆22Sep 18, 2025Updated 5 months ago
- ☆11Feb 20, 2026Updated last week
- Repo hosting the MetFrag website☆10Jan 24, 2025Updated last year
- Mass spectral library manager☆13Apr 9, 2020Updated 5 years ago
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆26Jan 21, 2024Updated 2 years ago
- OpenAPI based libraries for different programming languages like R and Python☆19Feb 19, 2026Updated last week
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆162Feb 17, 2026Updated 2 weeks ago
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆114Nov 13, 2025Updated 3 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Aug 28, 2023Updated 2 years ago
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 2 years ago
- Molecular formula discovery via bottom-up MS/MS interrogation☆13Sep 4, 2024Updated last year
- Tandem Mass Spectrum Prediction with Graph Transformers☆99Aug 26, 2024Updated last year
- MS2Query - machine learning assisted library querying of MS/MS spectra☆55Nov 6, 2025Updated 3 months ago
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆35Jan 18, 2026Updated last month
- ☆24Feb 24, 2026Updated last week
- ☆20Jul 12, 2023Updated 2 years ago
- Spectral entropy for mass spectrometry data.☆36Dec 25, 2025Updated 2 months ago
- ☆21Mar 26, 2025Updated 11 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆21Jan 12, 2026Updated last month
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆56Dec 10, 2025Updated 2 months ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- A small library to provide peak picking for software processing mass spectrometry data☆23Dec 3, 2024Updated last year
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆23Oct 13, 2025Updated 4 months ago
- Predicting MS1 precursor chemical formula from MS/MS data☆24Sep 20, 2023Updated 2 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Oct 31, 2025Updated 4 months ago
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆75Jun 5, 2024Updated last year
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆47Feb 23, 2026Updated last week
- MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION☆20Sep 23, 2025Updated 5 months ago
- R Interface to the Metabolights REST API☆11Aug 19, 2025Updated 6 months ago
- Prediction of glycopeptide fragment mass spectra by deep learning☆10Feb 20, 2024Updated 2 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆12Nov 20, 2025Updated 3 months ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆11Jun 18, 2025Updated 8 months ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- ☆11Feb 5, 2024Updated 2 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Aug 16, 2023Updated 2 years ago
- ☆30Feb 18, 2025Updated last year
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆33Feb 12, 2026Updated 2 weeks ago