Improve the accuracy of database search by using BERT to embed MS/MS reasonably
☆21Oct 15, 2024Updated last year
Alternatives and similar repositories for MSBERT
Users that are interested in MSBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Sep 18, 2025Updated 10 months ago
- ☆16Apr 7, 2026Updated 4 months ago
- ☆11Nov 30, 2024Updated last year
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 4 months ago
- Mass spectral library manager☆13Apr 9, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 3 years ago
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆39Apr 15, 2026Updated 3 months ago
- ☆13Jan 16, 2025Updated last year
- Deep cross-model between MS/MS spectra and structures for unknown metabolite identification☆15Dec 11, 2025Updated 8 months ago
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆198Jun 5, 2026Updated 2 months ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆86Jul 17, 2026Updated 3 weeks ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆100Aug 26, 2024Updated last year
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆146May 8, 2026Updated 3 months ago
- Repo hosting the MetFrag website☆11Apr 6, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MS2Query - machine learning assisted library querying of MS/MS spectra☆58Nov 6, 2025Updated 9 months ago
- Predicting MS1 precursor chemical formula from MS/MS data☆26Sep 20, 2023Updated 2 years ago
- Molecular formula discovery via bottom-up MS/MS interrogation☆13Sep 4, 2024Updated last year
- ☆12Feb 20, 2026Updated 5 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Aug 28, 2023Updated 2 years ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆24Updated this week
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆53Apr 28, 2026Updated 3 months ago
- ☆22Mar 26, 2025Updated last year
- ☆120Mar 10, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Spectral entropy for mass spectrometry data.☆38Jul 7, 2026Updated last month
- AI for Chemical Spectra☆18Updated this week
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- https://taxonomicallyinformedannotation.github.io/tima☆16Updated this week
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated 3 months ago
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆81Jun 5, 2024Updated 2 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆14Jul 30, 2026Updated 2 weeks ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆63Jul 13, 2024Updated 2 years ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jul 17, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- OpenAPI based libraries for different programming languages like R and Python☆25Updated this week
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆63Jul 9, 2026Updated last month
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆25Jan 21, 2024Updated 2 years ago
- Predicting tandem mass spectra from molecules☆148Updated this week
- ☆20Jul 12, 2023Updated 3 years ago
- Create .mzML files through the R Console☆12Jun 14, 2026Updated 2 months ago
- Word2Vec based similarity measure of mass spectrometry data.☆87Nov 10, 2025Updated 9 months ago