zhanghailiangcsu / MSBERTLinks
Improve the accuracy of database search by using BERT to embed MS/MS reasonably
☆19Updated last year
Alternatives and similar repositories for MSBERT
Users that are interested in MSBERT are comparing it to the libraries listed below
Sorting:
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆27Updated last year
- ☆22Updated 3 months ago
- OpenAPI based libraries for different programming languages like R and Python☆18Updated last week
- ☆11Updated last year
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆58Updated 2 weeks ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆71Updated 3 weeks ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆16Updated 3 weeks ago
- Spectral entropy for mass spectrometry data.☆34Updated this week
- ☆23Updated 9 months ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Updated last year
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆20Updated 3 months ago
- Efficiently predicting high resolution mass spectra with graph neural networks☆31Updated 2 years ago
- A small library to provide peak picking for software processing mass spectrometry data☆23Updated last year
- ☆27Updated 2 weeks ago
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆30Updated last year
- ☆33Updated last year
- a python package for molecular formula analysis in MS-based small molecule studies☆32Updated 5 months ago
- ☆11Updated 3 years ago
- ☆15Updated 4 years ago
- deep learning based prediction of structures and functional groups from MS/MS spectra☆11Updated 10 months ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆33Updated 4 years ago
- ☆29Updated last year
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Updated 2 years ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆33Updated 2 months ago
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆70Updated last year
- ☆15Updated 4 years ago
- A database of In-Silico predicted MS/MS spectrum of Natural Products☆15Updated 3 years ago
- ☆72Updated last year
- Base image providing dependencies for ASKCOS Docker images☆12Updated last year
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Updated last year