yikuanli / BEHRTLinks
BEHRT: Transformer for Electronic Health Recrods
☆12Updated 5 years ago
Alternatives and similar repositories for BEHRT
Users that are interested in BEHRT are comparing it to the libraries listed below
Sorting:
- Code for BEHRT: Transformer for Electronic Health Records☆119Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆98Updated 6 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆94Updated 2 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆89Updated last month
- ☆40Updated 3 years ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆37Updated 5 months ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆19Updated 2 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Updated last month
- source codes based on PyTorch to analyze EHR☆148Updated last year
- ☆37Updated 3 months ago
- Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series☆133Updated 3 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆70Updated 6 months ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- ☆18Updated 3 weeks ago
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆171Updated 9 months ago
- Patient Code & Text Representation Learning☆19Updated 2 years ago
- A simple set of MEDS polars-based ETL and transformation functions☆39Updated last month
- ☆107Updated 4 years ago
- A python package for removing duplicate text in clinical notes or other documents☆39Updated 5 years ago
- TemporAI: ML-centric Toolkit for Medical Time Series☆126Updated 2 years ago
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆61Updated 2 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆161Updated 3 weeks ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 3 years ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆116Updated 6 months ago
- Auton Survival - an open source package for Regression, Counterfactual Estimation, Evaluation and Phenotyping with Censored Time-to-Even…☆357Updated last year
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 5 years ago
- Code for the paper "Deep Cox Mixtures for Survival Regression", Machine Learning for Healthcare Conference 2021☆29Updated 3 years ago
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III☆464Updated last year
- Python implementation of POPDx - Predictions for unseen, rare, and common labels.☆11Updated last year