yikuanli / BEHRTLinks
BEHRT: Transformer for Electronic Health Recrods
☆12Updated 5 years ago
Alternatives and similar repositories for BEHRT
Users that are interested in BEHRT are comparing it to the libraries listed below
Sorting:
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆66Updated 2 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆95Updated 3 weeks ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆31Updated last week
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆80Updated 2 weeks ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last month
- source codes based on PyTorch to analyze EHR☆142Updated last year
- ☆40Updated 3 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆38Updated last month
- Mapping the MIMIC-III database to the OMOP schema☆139Updated last year
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆127Updated 2 years ago
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- Repository for the HiRID ICU Benchmark (HiB) project☆57Updated 2 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆149Updated this week
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆151Updated 3 months ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆178Updated last month
- ☆137Updated this week
- A simple set of MEDS polars-based ETL and transformation functions☆33Updated last week
- ☆104Updated 3 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆290Updated last year
- A python package for removing duplicate text in clinical notes or other documents☆37Updated 4 years ago
- Python implementation of POPDx - Predictions for unseen, rare, and common labels.☆10Updated last year
- An open source automl library for using machine learning in healthcare.☆119Updated last year
- A customizable pipeline for data extraction from MIMIC-IV.☆241Updated last year
- ☆17Updated last year
- Code for the paper "Deep Cox Mixtures for Survival Regression", Machine Learning for Healthcare Conference 2021☆29Updated 2 years ago
- ☆72Updated 4 months ago