Alternatives and similar repositories for Targeted-BEHRT

Users that are interested in Targeted-BEHRT are comparing it to the libraries listed below

• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆119Updated 2 years ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆97Updated 5 months ago
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆147Updated last year
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆92Updated last month
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆44Updated last week
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆67Updated 6 months ago
• RyanWangZf / SurvTRACE
  SurvTRACE: Transformers for Survival Analysis with Competing Events
  ☆60Updated 2 years ago
• MLD3 / FIDDLE-experiments
  Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139
  ☆24Updated 3 years ago
• AmsterdamUMC / AmsterdamUMCdb
  AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916
  ☆192Updated last month
• landiisotta / convae_architecture
  ☆40Updated 3 years ago
• rvandewater / YAIB
  🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…
  ☆88Updated 2 weeks ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆111Updated 2 years ago
• sajaddarabi / TAPER-EHR
  Patient Code & Text Representation Learning
  ☆19Updated 2 years ago
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆310Updated last year
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆37Updated 4 months ago
• ratschlab / HIRID-ICU-Benchmark
  Repository for the HiRID ICU Benchmark (HiB) project
  ☆58Updated 2 years ago
• som-shahlab / ehr_ml
  Code for doing machine learning with various EHRs
  ☆22Updated 2 years ago
• vanderschaarlab / temporai
  TemporAI: ML-centric Toolkit for Medical Time Series
  ☆126Updated 2 years ago
• nliulab / mimic4ed-benchmark
  Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.
  ☆87Updated 3 years ago
• ratschlab / circEWS
  circEWS public code
  ☆74Updated last year
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆87Updated last month
• justin13601 / ACES
  [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
  ☆38Updated 2 months ago
• mmcdermott / MEDS_transforms
  A simple set of MEDS polars-based ETL and transformation functions
  ☆39Updated last month
• alistairewj / mimic-iv-aline-study
  Replication of the arterial line study in MIMIC-IV
  ☆75Updated 4 years ago
• vanderschaarlab / autoprognosis
  A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.
  ☆168Updated 8 months ago
• nrodemund / sicdb
  ☆18Updated last year
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆205Updated 6 months ago
• healthylaife / MIMIC-IV-Data-Pipeline
  A customizable pipeline for data extraction from MIMIC-IV; now multimodal!
  ☆288Updated last month
• google / ehr-predictions
  ☆107Updated 4 years ago
• ipolharvard / ethos-paper
  ☆81Updated 9 months ago