deepmedicine / Targeted-BEHRTLinks
Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records
☆20Updated 2 years ago
Alternatives and similar repositories for Targeted-BEHRT
Users that are interested in Targeted-BEHRT are comparing it to the libraries listed below
Sorting:
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 3 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆81Updated 2 months ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆25Updated 3 years ago
- source codes based on PyTorch to analyze EHR☆147Updated last year
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆37Updated last week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆39Updated last week
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆64Updated 3 months ago
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆185Updated 8 months ago
- circEWS public code☆72Updated 11 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆84Updated 3 weeks ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆79Updated last month
- Repository for the HiRID ICU Benchmark (HiB) project☆59Updated 2 years ago
- Replication of the arterial line study in MIMIC-IV☆74Updated 3 years ago
- ☆41Updated 3 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆84Updated 2 years ago
- A simple set of MEDS polars-based ETL and transformation functions☆35Updated 3 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆35Updated 2 months ago
- TemporAI: ML-centric Toolkit for Medical Time Series☆121Updated last year
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆58Updated 2 years ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆117Updated 2 years ago
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆165Updated 6 months ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆29Updated last week
- Med-BERT, contextualized embedding model for structured EHR data☆306Updated last year
- ☆17Updated last year
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆134Updated last month
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆156Updated this week
- Installing MIMIC-IV in a local Postgres database☆42Updated 4 years ago