deepmedicine / Targeted-BEHRTLinks
Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records
☆20Updated 2 years ago
Alternatives and similar repositories for Targeted-BEHRT
Users that are interested in Targeted-BEHRT are comparing it to the libraries listed below
Sorting:
- Code for BEHRT: Transformer for Electronic Health Records☆112Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 2 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆185Updated 7 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆72Updated 3 weeks ago
- source codes based on PyTorch to analyze EHR☆145Updated last year
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆25Updated 3 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated 2 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆35Updated 2 months ago
- A simple set of MEDS polars-based ETL and transformation functions☆33Updated last month
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆83Updated last week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆37Updated 3 weeks ago
- Repository for the HiRID ICU Benchmark (HiB) project☆58Updated 2 years ago
- circEWS public code☆70Updated 10 months ago
- OMOP standardization pipeline for ICU databases☆44Updated 6 months ago
- Replication of the arterial line study in MIMIC-IV☆73Updated 3 years ago
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆74Updated last week
- TemporAI: ML-centric Toolkit for Medical Time Series☆119Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆33Updated 3 weeks ago
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆56Updated last year
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆128Updated this week
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆83Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆297Updated last year
- ☆41Updated 3 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆189Updated 2 months ago
- ☆76Updated 5 months ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆284Updated 4 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆155Updated 3 weeks ago
- ☆26Updated 5 years ago