Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-implemented models belong to the family of neural population models.
☆93Jun 12, 2026Updated 3 months ago
Alternatives and similar repositories for PyRates
Users that are interested in PyRates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Nov 2, 2023Updated 2 years ago
- The mildly ominous parameter exploration toolkit 🛵 - Run huge simulations on distributed clusters, because why not? 🤯☆14Feb 16, 2021Updated 5 years ago
- BluePyEfe: Blue Brain Python E-feature extraction☆17Feb 26, 2025Updated last year
- Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿🔬☆493Nov 13, 2025Updated 10 months ago
- S(usceptible)E(xcited)R(efractory) model on graphs, a dynamical model of spreading excitations☆14Aug 5, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for analyzing spiking data from single-neuron recodings.☆33Updated this week
- Model fitting toolbox for the Brian 2 simulator☆18Apr 28, 2026Updated 4 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Python-module for calculation of extracellular potentials from multicompartment neuron models and networks☆93May 13, 2026Updated 4 months ago
- C++ library for simulation of multiscale neural field dynamics☆38Dec 15, 2018Updated 7 years ago
- Slides from my talk on spaCy IRL, regarding sparse attention.☆12Jul 9, 2019Updated 7 years ago
- 🔬 Python Scripts for applications in Natural Sciences (Physics, Biology, Chemistry). Updating on a regular basis.☆11Feb 6, 2021Updated 5 years ago
- Needed for NEURON GUI☆12Sep 7, 2026Updated 2 weeks ago
- This is material written for the masterclass Numerical and Analytical Methods for Spatially-Extended Neurobiological Networks, held at th…☆20May 23, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- NeuroTools is a collection of tools for representing and anlyzing neuroscientific data.☆31Mar 20, 2020Updated 6 years ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 4 years ago
- A package to study complex networks based on the temporal evolution of their Dynamic Communicability and Flow.☆11Jan 30, 2026Updated 7 months ago
- Main TVB codebase☆191Updated this week
- Acoustic camera system for measuring ultrasound communication in rodents☆23Jun 24, 2026Updated 2 months ago
- Optimisation on Diffeomorphisms☆12Feb 17, 2025Updated last year
- Some methods for comparing network representations in deep learning and neuroscience.☆145Jul 30, 2024Updated 2 years ago
- 🚗[src] + [personal notes] for the "Self-Driving Car" course on UDEMY☆14Nov 20, 2019Updated 6 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆25Nov 7, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Dimensionality-reduction and classification for morphology and electrophysiology☆12Sep 23, 2024Updated last year
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆203Jan 26, 2026Updated 7 months ago
- A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks…☆175Updated this week
- Python package for automated bifurcation analysis and parameter continuations, based on Auto-07p.☆25Jun 7, 2026Updated 3 months ago
- Analysis code for the OpenScope Credit Assignment project.☆13Sep 2, 2026Updated 2 weeks ago
- MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MR…☆22Dec 23, 2022Updated 3 years ago
- Digital Signal Processing for Big EEGs☆13Feb 9, 2026Updated 7 months ago
- The Blue Brain Pythonic Simulation and Network Analysis Productivity layer☆21Feb 26, 2025Updated last year
- SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.☆21Apr 18, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- High-level Python API for the EBRAINS Knowledge Graph☆14Updated this week
- Repository for collecting materials from nwb hackathons☆25Nov 7, 2025Updated 10 months ago
- Collaborative Brain Wave Analysis Pipeline (Cobrawap)☆27Sep 25, 2025Updated 11 months ago
- A lightweight I/O utility for the BrainVision data format, written in Python.☆24Aug 24, 2026Updated 3 weeks ago
- Code base for the SENSORIUM competition.☆65Aug 8, 2024Updated 2 years ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆119Updated this week
- Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi instead☆73Jul 3, 2020Updated 6 years ago