Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-implemented models belong to the family of neural population models.
β91May 17, 2026Updated this week
Alternatives and similar repositories for PyRates
Users that are interested in PyRates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β11Nov 2, 2023Updated 2 years ago
- The mildly ominous parameter exploration toolkit π΅ - Run huge simulations on distributed clusters, because why not? π€―β14Feb 16, 2021Updated 5 years ago
- BluePyEfe: Blue Brain Python E-feature extractionβ17Feb 26, 2025Updated last year
- This is material written for the masterclass Numerical and Analytical Methods for Spatially-Extended Neurobiological Networks, held at thβ¦β20May 23, 2024Updated 2 years ago
- Easy whole-brain modeling for computational neuroscientists π§ π»π©πΏβπ¬β473Nov 13, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools for analyzing spiking data from single-neuron recodings.β31Feb 20, 2026Updated 3 months ago
- Model fitting toolbox for the Brian 2 simulatorβ18Apr 28, 2026Updated 3 weeks ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.β12Nov 26, 2020Updated 5 years ago
- S(usceptible)E(xcited)R(efractory) model on graphs, a dynamical model of spreading excitationsβ14Sep 27, 2025Updated 7 months ago
- Python-module for calculation of extracellular potentials from multicompartment neuron models and networksβ88May 13, 2026Updated last week
- C++ library for simulation of multiscale neural field dynamicsβ35Dec 15, 2018Updated 7 years ago
- Slides from my talk on spaCy IRL, regarding sparse attention.β12Jul 9, 2019Updated 6 years ago
- Needed for NEURON GUIβ12May 14, 2026Updated last week
- NeuroTools is a collection of tools for representing and anlyzing neuroscientific data.β32Mar 20, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Naturβ¦β18Mar 4, 2022Updated 4 years ago
- Package for fitting/optimization of NeuroML modelsβ18Apr 22, 2026Updated last month
- π¬ Python Scripts for applications in Natural Sciences (Physics, Biology, Chemistry). Updating on a regular basis.β11Feb 6, 2021Updated 5 years ago
- A package to study complex networks based on the temporal evolution of their Dynamic Communicability and Flow.β11Jan 30, 2026Updated 3 months ago
- Optimisation on Diffeomorphismsβ12Feb 17, 2025Updated last year
- Main TVB codebaseβ177May 15, 2026Updated last week
- Acoustic camera system for measuring ultrasound communication in rodentsβ22Jan 19, 2026Updated 4 months ago
- Some methods for comparing network representations in deep learning and neuroscience.β143Jul 30, 2024Updated last year
- π[src] + [personal notes] for the "Self-Driving Car" course on UDEMYβ14Nov 20, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dimensionality-reduction and classification for morphology and electrophysiologyβ12Sep 23, 2024Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singβ¦β191Jan 26, 2026Updated 3 months ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.β25Nov 7, 2022Updated 3 years ago
- Python package for automated bifurcation analysis and parameter continuations, based on Auto-07p.β25Sep 11, 2025Updated 8 months ago
- MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MRβ¦β23Dec 23, 2022Updated 3 years ago
- A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networksβ¦β169May 1, 2026Updated 3 weeks ago
- Analysis code for the OpenScope Credit Assignment project.β13Jul 9, 2024Updated last year
- The Blue Brain Pythonic Simulation and Network Analysis Productivity layerβ21Feb 26, 2025Updated last year
- Digital Signal Processing for Big EEGsβ13Feb 9, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.β21Apr 18, 2024Updated 2 years ago
- A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Taskβ21Feb 4, 2025Updated last year
- High-level Python API for the EBRAINS Knowledge Graphβ14May 14, 2026Updated last week
- A Python toolbox for analysing animal body movements across space and timeβ277May 15, 2026Updated last week
- Launch jobs, organize the output, and dissect the resultsβ32Sep 6, 2017Updated 8 years ago
- Code base for the SENSORIUM competition.β63Aug 8, 2024Updated last year
- Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi insteadβ73Jul 3, 2020Updated 5 years ago