Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-implemented models belong to the family of neural population models.
β92Jun 12, 2026Updated 2 months ago
Alternatives and similar repositories for PyRates
Users that are interested in PyRates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β11Nov 2, 2023Updated 2 years ago
- The mildly ominous parameter exploration toolkit π΅ - Run huge simulations on distributed clusters, because why not? π€―β14Feb 16, 2021Updated 5 years ago
- BluePyEfe: Blue Brain Python E-feature extractionβ17Feb 26, 2025Updated last year
- Easy whole-brain modeling for computational neuroscientists π§ π»π©πΏβπ¬β488Nov 13, 2025Updated 8 months ago
- S(usceptible)E(xcited)R(efractory) model on graphs, a dynamical model of spreading excitationsβ14Aug 5, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tools for analyzing spiking data from single-neuron recodings.β31Jun 22, 2026Updated last month
- Model fitting toolbox for the Brian 2 simulatorβ18Apr 28, 2026Updated 3 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.β12Nov 26, 2020Updated 5 years ago
- Python-module for calculation of extracellular potentials from multicompartment neuron models and networksβ93May 13, 2026Updated 2 months ago
- C++ library for simulation of multiscale neural field dynamicsβ37Dec 15, 2018Updated 7 years ago
- Slides from my talk on spaCy IRL, regarding sparse attention.β12Jul 9, 2019Updated 7 years ago
- π¬ Python Scripts for applications in Natural Sciences (Physics, Biology, Chemistry). Updating on a regular basis.β11Feb 6, 2021Updated 5 years ago
- Needed for NEURON GUIβ12May 14, 2026Updated 2 months ago
- This is material written for the masterclass Numerical and Analytical Methods for Spatially-Extended Neurobiological Networks, held at thβ¦β20May 23, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NeuroTools is a collection of tools for representing and anlyzing neuroscientific data.β31Mar 20, 2020Updated 6 years ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Naturβ¦β18Mar 4, 2022Updated 4 years ago
- A package to study complex networks based on the temporal evolution of their Dynamic Communicability and Flow.β11Jan 30, 2026Updated 6 months ago
- Main TVB codebaseβ185Aug 5, 2026Updated last week
- Acoustic camera system for measuring ultrasound communication in rodentsβ23Jun 24, 2026Updated last month
- Optimisation on Diffeomorphismsβ12Feb 17, 2025Updated last year
- Some methods for comparing network representations in deep learning and neuroscience.β146Jul 30, 2024Updated 2 years ago
- π[src] + [personal notes] for the "Self-Driving Car" course on UDEMYβ14Nov 20, 2019Updated 6 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.β25Nov 7, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Dimensionality-reduction and classification for morphology and electrophysiologyβ12Sep 23, 2024Updated last year
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also inclβ¦β199Jan 26, 2026Updated 6 months ago
- A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networksβ¦β171Jul 13, 2026Updated 3 weeks ago
- Python package for automated bifurcation analysis and parameter continuations, based on Auto-07p.β25Jun 7, 2026Updated 2 months ago
- Analysis code for the OpenScope Credit Assignment project.β13Jul 9, 2024Updated 2 years ago
- MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MRβ¦β22Dec 23, 2022Updated 3 years ago
- Digital Signal Processing for Big EEGsβ13Feb 9, 2026Updated 6 months ago
- The Blue Brain Pythonic Simulation and Network Analysis Productivity layerβ21Feb 26, 2025Updated last year
- SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.β21Apr 18, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Taskβ22Feb 4, 2025Updated last year
- High-level Python API for the EBRAINS Knowledge Graphβ14Jun 25, 2026Updated last month
- Repository for collecting materials from nwb hackathonsβ25Nov 7, 2025Updated 9 months ago
- Collaborative Brain Wave Analysis Pipeline (Cobrawap)β28Sep 25, 2025Updated 10 months ago
- A lightweight I/O utility for the BrainVision data format, written in Python.β24Jul 27, 2026Updated 2 weeks ago
- Code base for the SENSORIUM competition.β64Aug 8, 2024Updated 2 years ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSFβ118Updated this week