Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-implemented models belong to the family of neural population models.
β88Jan 8, 2026Updated 2 months ago
Alternatives and similar repositories for PyRates
Users that are interested in PyRates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β11Nov 2, 2023Updated 2 years ago
- The mildly ominous parameter exploration toolkit π΅ - Run huge simulations on distributed clusters, because why not? π€―β14Feb 16, 2021Updated 5 years ago
- BluePyEfe: Blue Brain Python E-feature extractionβ17Feb 26, 2025Updated last year
- This is material written for the masterclass Numerical and Analytical Methods for Spatially-Extended Neurobiological Networks, held at thβ¦β19May 23, 2024Updated last year
- Easy whole-brain modeling for computational neuroscientists π§ π»π©πΏβπ¬β465Nov 13, 2025Updated 4 months ago
- Tools for analyzing spiking data from single-neuron recodings.β29Feb 20, 2026Updated last month
- Model fitting toolbox for the Brian 2 simulatorβ18Jan 14, 2026Updated 2 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.β12Nov 26, 2020Updated 5 years ago
- S(usceptible)E(xcited)R(efractory) model on graphs, a dynamical model of spreading excitationsβ14Sep 27, 2025Updated 5 months ago
- Python-module for calculation of extracellular potentials from multicompartment neuron models and networksβ87Nov 12, 2025Updated 4 months ago
- C++ library for simulation of multiscale neural field dynamicsβ35Dec 15, 2018Updated 7 years ago
- Needed for NEURON GUIβ11Jun 13, 2025Updated 9 months ago
- NeuroTools is a collection of tools for representing and anlyzing neuroscientific data.β32Mar 20, 2020Updated 6 years ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Naturβ¦β18Mar 4, 2022Updated 4 years ago
- Package for fitting/optimization of NeuroML modelsβ18Apr 10, 2025Updated 11 months ago
- A package to study complex networks based on the temporal evolution of their Dynamic Communicability and Flow.β11Jan 30, 2026Updated last month
- Optimisation on Diffeomorphismsβ12Feb 17, 2025Updated last year
- Main TVB codebaseβ166Jan 13, 2026Updated 2 months ago
- Acoustic camera system for measuring ultrasound communication in rodentsβ22Jan 19, 2026Updated 2 months ago
- Some methods for comparing network representations in deep learning and neuroscience.β142Jul 30, 2024Updated last year
- Dimensionality-reduction and classification for morphology and electrophysiologyβ12Sep 23, 2024Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singβ¦β188Jan 26, 2026Updated last month
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.β25Nov 7, 2022Updated 3 years ago
- MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MRβ¦β22Dec 23, 2022Updated 3 years ago
- Python package for automated bifurcation analysis and parameter continuations, based on Auto-07p.β24Sep 11, 2025Updated 6 months ago
- A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networksβ¦β167Feb 18, 2026Updated last month
- Analysis code for the OpenScope Credit Assignment project.β13Jul 9, 2024Updated last year
- The Blue Brain Pythonic Simulation and Network Analysis Productivity layerβ20Feb 26, 2025Updated last year
- Digital Signal Processing for Big EEGsβ13Feb 9, 2026Updated last month
- SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.β20Apr 18, 2024Updated last year
- A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Taskβ21Feb 4, 2025Updated last year
- A Python toolbox for analysing animal body movements across space and timeβ257Mar 13, 2026Updated last week
- High-level Python API for the EBRAINS Knowledge Graphβ13Updated this week
- Launch jobs, organize the output, and dissect the resultsβ32Sep 6, 2017Updated 8 years ago
- Code base for the SENSORIUM competition.β63Aug 8, 2024Updated last year
- A lightweight I/O utility for the BrainVision data format, written in Python.β23Mar 2, 2026Updated 3 weeks ago
- Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi insteadβ73Jul 3, 2020Updated 5 years ago
- Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological dataβ134Nov 7, 2025Updated 4 months ago
- Modeling animal vocalizations with variational autoencodersβ27Mar 2, 2024Updated 2 years ago