Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-implemented models belong to the family of neural population models.
☆92Jun 12, 2026Updated last month
Alternatives and similar repositories for PyRates
Users that are interested in PyRates are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Nov 2, 2023Updated 2 years ago
- The mildly ominous parameter exploration toolkit 🛵 - Run huge simulations on distributed clusters, because why not? 🤯☆14Feb 16, 2021Updated 5 years ago
- BluePyEfe: Blue Brain Python E-feature extraction☆17Feb 26, 2025Updated last year
- Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿🔬☆488Nov 13, 2025Updated 8 months ago
- S(usceptible)E(xcited)R(efractory) model on graphs, a dynamical model of spreading excitations☆14Sep 27, 2025Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tools for analyzing spiking data from single-neuron recodings.☆31Jun 22, 2026Updated last month
- Model fitting toolbox for the Brian 2 simulator☆18Apr 28, 2026Updated 2 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Python-module for calculation of extracellular potentials from multicompartment neuron models and networks☆92May 13, 2026Updated 2 months ago
- C++ library for simulation of multiscale neural field dynamics☆37Dec 15, 2018Updated 7 years ago
- Slides from my talk on spaCy IRL, regarding sparse attention.☆12Jul 9, 2019Updated 7 years ago
- 🔬 Python Scripts for applications in Natural Sciences (Physics, Biology, Chemistry). Updating on a regular basis.☆11Feb 6, 2021Updated 5 years ago
- Needed for NEURON GUI☆12May 14, 2026Updated 2 months ago
- This is material written for the masterclass Numerical and Analytical Methods for Spatially-Extended Neurobiological Networks, held at th…☆20May 23, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- NeuroTools is a collection of tools for representing and anlyzing neuroscientific data.☆31Mar 20, 2020Updated 6 years ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 4 years ago
- A package to study complex networks based on the temporal evolution of their Dynamic Communicability and Flow.☆11Jan 30, 2026Updated 5 months ago
- Main TVB codebase☆181Jul 10, 2026Updated last week
- Acoustic camera system for measuring ultrasound communication in rodents☆22Jun 24, 2026Updated 3 weeks ago
- Optimisation on Diffeomorphisms☆12Feb 17, 2025Updated last year
- Some methods for comparing network representations in deep learning and neuroscience.☆145Jul 30, 2024Updated last year
- 🚗[src] + [personal notes] for the "Self-Driving Car" course on UDEMY☆14Nov 20, 2019Updated 6 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆25Nov 7, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Dimensionality-reduction and classification for morphology and electrophysiology☆12Sep 23, 2024Updated last year
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆199Jan 26, 2026Updated 5 months ago
- A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks…☆171Jul 13, 2026Updated last week
- Python package for automated bifurcation analysis and parameter continuations, based on Auto-07p.☆25Jun 7, 2026Updated last month
- Analysis code for the OpenScope Credit Assignment project.☆13Jul 9, 2024Updated 2 years ago
- MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MR…☆22Dec 23, 2022Updated 3 years ago
- Digital Signal Processing for Big EEGs☆13Feb 9, 2026Updated 5 months ago
- The Blue Brain Pythonic Simulation and Network Analysis Productivity layer☆21Feb 26, 2025Updated last year
- SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.☆21Apr 18, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Task☆21Feb 4, 2025Updated last year
- High-level Python API for the EBRAINS Knowledge Graph☆14Jun 25, 2026Updated 3 weeks ago
- Repository for collecting materials from nwb hackathons☆25Nov 7, 2025Updated 8 months ago
- Collaborative Brain Wave Analysis Pipeline (Cobrawap)☆28Sep 25, 2025Updated 9 months ago
- A lightweight I/O utility for the BrainVision data format, written in Python.☆24Jun 29, 2026Updated 3 weeks ago
- Code base for the SENSORIUM competition.☆63Aug 8, 2024Updated last year
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆118Jul 16, 2026Updated last week