EmoryUniversityTheoreticalBiophysics / SirIsaac
Automated dynamical systems inference
☆38Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SirIsaac
- Python package for automated bifurcation analysis and parameter continuations, based on Auto-07p.☆21Updated 3 months ago
- [UNMAINTAINED] XPPy is Python interface for Bard Ermentrout's XPP.☆29Updated 2 years ago
- Black box variational inference for state space models☆1Updated 8 years ago
- This code package is for the Tensor-Maximum-Entropy (TME) method. This method generates random surrogate data that preserves a specified …☆16Updated 7 years ago
- Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi instead☆72Updated 4 years ago
- 🔋 Utilities for scientific python☆20Updated 3 months ago
- Online spike sorting methods in Julia☆12Updated last year
- Recordings of 10k neurons during spontaneous behaviors☆50Updated 7 months ago
- Fit an Ising model with neural spike train data using Minimum Probability Flow Learning. Based on code from Jascha Sohl-Dickstein.☆19Updated 7 years ago
- Model fitting toolbox for the Brian 2 simulator☆14Updated last year
- Neyman-Scott point process model to identify sequential firing patterns in high-dimensional spike trains☆62Updated last year
- CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations☆19Updated 3 years ago
- Dimensionality reduction of spikes trains☆48Updated 3 years ago
- Interpretable neural spike train models with fully-Bayesian inference algorithms☆48Updated 6 years ago
- a python binding to XPPAUT☆9Updated last year
- Slides and demos from JuliaCon 2017 on 'Event-based Simulation of Spiking Neural Networks in Julia'☆16Updated 7 years ago
- SpikeForest -- spike sorting analysis for website☆16Updated 4 years ago
- code to compute the Dynamic Mode Decomposition (DMD), adapted for large-scale neural recordings☆26Updated 8 years ago
- Julia Spiking Neural Network Simulator☆39Updated 3 years ago
- ☆9Updated 4 years ago
- Python implementation of fast-oopsi, smc-oopsi, wiener, and discretize with binning☆14Updated 2 years ago
- Code for Galgali et al, 2023☆11Updated last year
- Exercises and examples for the latent dynamics workshop☆16Updated last year
- Support material for MAT6115, Université de Montréal, Fall 2018☆25Updated 10 months ago
- Dimensionality Reduction with Eilenberg-MacLane Coordinates☆39Updated 2 months ago
- Holmes-Nemenman modified KSG continuous entropy estimator☆16Updated 3 years ago
- A unified framework for skeletonization, morphological analysis, and connectivity analysis.☆39Updated 2 months ago
- Dynamical Components Analysis☆30Updated last year
- A collection of matplotlib style sheets and plotting tools for publication-ready figures☆14Updated 2 years ago
- Algorithm for Revealing Network Interactions (ARNI) from nonlinear collective dynamics☆25Updated 6 years ago