JaneliaMLCourse / MathClub

Related projects ⓘ

Alternatives and complementary repositories for MathClub

• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆63Updated 3 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆43Updated 5 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆124Updated 8 months ago
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆68Updated 4 years ago
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆55Updated 3 years ago
• PeyracheLab / Tutorial_HDPlaceCells_Analysis
  A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.
  ☆14Updated 6 years ago
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated last year
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆37Updated 7 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆69Updated 2 months ago
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆77Updated this week
• pillowlab / GLMspiketraintutorial
  Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
  ☆91Updated 2 years ago
• AllenInstitute / brain_observatory_examples
  Gallery of visualizations and analyses of the Allen Brain Observatory
  ☆24Updated 2 years ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆113Updated last month
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆119Updated 11 months ago
• petersaj / AP_histology
  Histology processing
  ☆64Updated 8 months ago
• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆42Updated last year
• SpikeInterface / spiketutorials
  Tutorials for using SpikeInterface on extracellular datasets.
  ☆60Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated 11 months ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆45Updated this week
• NeurodataWithoutBorders / matnwb
  A Matlab interface for reading and writing NWB files
  ☆48Updated this week
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆109Updated 3 months ago
• jenniferColonell / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆54Updated 3 weeks ago
• open-ephys / analysis-tools
  Archived code for reading data saved by the Open Ephys GUI
  ☆59Updated last year
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆83Updated this week
• nicholas-roy / psytrack
  ☆47Updated 3 years ago
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆63Updated this week
• murthylab / GLMHMM
  ☆21Updated 4 years ago
• buzsakilab / 3d_print_designs
  ☆13Updated 6 months ago
• omarcr / bcs-mit-computational-tutorial
  ☆16Updated 5 years ago
• pillowlab / GLMspiketraintutorial_python
  ☆46Updated 2 years ago