Alternatives and similar repositories for openge

Users that are interested in openge are comparing it to the libraries listed below

• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 6 years ago
• nfergu / popstrat
  Population Stratification Analysis on Genomics Data Using Deep Learning
  ☆26Updated 8 years ago
• NVlabs / nvbio-gpl
  NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
  ☆59Updated 10 years ago
• kbase / kb_sdk
  Build and test new apps for the KBase platform
  ☆28Updated 4 months ago
• BioInterchange / Ontologies
  Home of the Genomic Feature and Variation Ontology (GFVO)
  ☆16Updated 4 years ago
• arvados / lightning-server-legacy
  lightning
  ☆11Updated 9 years ago
• bigdatagenomics / bdg-formats
  Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
  ☆40Updated 5 months ago
• citiususc / BigBWA
  BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).
  ☆31Updated 3 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• med-at-scale / high-health
  Integrate the GA4GH schemas and probably a scala impl of the service.
  ☆14Updated 9 years ago
• cjlee112 / pygr
  Python graph database framework for bioinformatics
  ☆93Updated 3 years ago
• Intel-HLS / TileDB
  TileDB
  ☆79Updated 2 years ago
• hammerlab / guacamole
  Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly
  ☆84Updated 7 years ago
• BauerLab / VariantSpark
  VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
  ☆33Updated 7 years ago
• BD2KGenomics / cgcloud
  Image and VM management for Jenkins, Spark and Mesos clusters in EC2
  ☆22Updated 4 years ago
• hammerlab / pageant
  Parallel Genomic Analysis Toolkit
  ☆14Updated 6 years ago
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆24Updated 10 years ago
• broadinstitute / firepony
  Efficient base quality score recalibrator for NGS data
  ☆24Updated 9 years ago
• Caleydo / caleydo
  Caleydo - Visualization for Molecular Biology
  ☆58Updated 8 years ago
• arahuja / pytcga
  DEPRECATED: Store and query public TCGA data
  ☆11Updated 8 years ago
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆62Updated 2 years ago
• allenday / spark-genome-alignment-demo
  An example of bioinformatics and bigdata tools can playing nicely together
  ☆14Updated 9 years ago
• OpenMendel / OpenMendel.github.io
  The main website for the OpenMendel project.
  ☆13Updated 2 years ago
• fulcrumgenomics / dagr
  A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
  ☆69Updated 3 years ago
• 4QuantOSS / sge_spark
  The configuration and scripts for using spark within a Sun Grid Engine environment
  ☆24Updated 11 years ago
• FDA / fda-hive
  FDA High-performance Integrated Virtual Environment (HIVE)
  ☆38Updated 4 years ago
• jaxcs / Seqnature
  Seqnature: incorporate SNPs and Indels into a reference genome
  ☆16Updated 8 years ago
• pcingola / BigDataScript
  BigDataScript: Scirpting language for big data
  ☆92Updated 4 years ago
• PriceLab / snapr
  SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
  ☆25Updated 10 years ago
• mcapuccini / TheSparkBox
  TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.
  ☆12Updated 7 years ago