adaptivegenome / openge
An accelerated framework for manipulating and interpreting high-throughput sequencing data
☆26Updated 11 years ago
Related projects ⓘ
Alternatives and complementary repositories for openge
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆39Updated last month
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 3 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 8 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Updated 9 years ago
- Caleydo - Visualization for Molecular Biology☆58Updated 7 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Updated 4 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 5 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 8 years ago
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Updated 7 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 6 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆15Updated 8 years ago
- lightning☆11Updated 9 years ago
- Lightweight workflows in bioinformatics:☆23Updated 10 years ago
- Python graph database framework for bioinformatics☆92Updated 2 years ago
- Software for exploration of gene expression data from single-cell RNA sequencing.☆28Updated 5 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 4 years ago
- High throughput, pain-free big data pipelines.☆30Updated 7 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 7 years ago
- BigDataScript: Scirpting language for big data☆92Updated 3 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 5 years ago
- Isaac Genome Alignment Software☆37Updated 9 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago