Alternatives and similar repositories for build-bio-linux

Users that are interested in build-bio-linux are comparing it to the libraries listed below

• dgpinheiro / bioinfoutilities
  Bioinformatics scripts
  ☆14Updated last year
• pcingola / SnpSift
  ☆38Updated 2 months ago
• AlistairNWard / vcfPytools
  vcf file manipulation
  ☆22Updated 10 years ago
• genome-in-a-bottle / giab_data_analysis
  This repository contains information about ongoing analysis performed by GIAB
  ☆14Updated 6 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 3 years ago
• ALLBio / allbiotc2
  Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
  ☆24Updated 11 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 3 years ago
• gedoardo83 / GARFIELD-NGS
  GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS
  ☆17Updated 6 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆59Updated 8 years ago
• rhshah / iCallSV
  A Framework to call Structural Variants from NGS based datasets
  ☆22Updated 8 years ago
• tommyau / bamclipper
  Remove primer sequence from BAM alignments by soft-clipping
  ☆31Updated 6 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆23Updated 7 years ago
• ihh / gfftools
  Perl scripts for working with the GFF format
  ☆16Updated 14 years ago
• walaj / bxtools
  Tools for analyzing 10X Genomics data
  ☆42Updated 7 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆43Updated 7 years ago
• statgen / fastQValidator
  Validate FastQ Files
  ☆36Updated 7 years ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆74Updated 4 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• decodebiology / geneSCF_inactive
  GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
  ☆19Updated 5 years ago
• shengqh / ngsperl
  NGS perl modules
  ☆11Updated last week
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆64Updated 7 years ago
• cytham / nanovar
  Structural variant caller for low-depth long-read sequencing data
  ☆45Updated 2 weeks ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆30Updated 4 years ago
• pughlab / bamgineer
  Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
  ☆38Updated 5 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆32Updated 10 years ago
• umd-byob / presentations
  Bring Your Own Bioinformatics
  ☆27Updated 9 years ago
• WGLab / SeqMule
  Automated human exome/genome variants detection from FASTQ files
  ☆23Updated 4 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 6 years ago