Alternatives and similar repositories for ucsc-xena-client:

Users that are interested in ucsc-xena-client are comparing it to the libraries listed below

• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆52Updated 3 weeks ago
• OBF / GSoC
  OBF Google Summer of Code
  ☆21Updated last week
• cBioPortal / mutation-mapper
  ☆13Updated 4 years ago
• 3DGenomes / TADbit
  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…
  ☆100Updated 3 weeks ago
• broadinstitute / gdctools
  Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons
  ☆31Updated 6 years ago
• broadinstitute / single_cell_portal_core
  Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
  ☆65Updated this week
• boutroslab / CRISPRAnalyzeR
  CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
  ☆80Updated 4 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆82Updated 6 months ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• broadinstitute / gtex-viz
  GTEx Visualizations
  ☆64Updated 3 years ago
• HumanCellAtlas / metadata-schema
  This repo is for the metadata schemas associated with the HCA
  ☆65Updated this week
• morrislab / phylowgs
  Application for inferring subclonal composition and evolution from whole-genome sequencing data.
  ☆108Updated 2 years ago
• joshuagryphon / plastid
  Position-wise analysis of sequencing and genomics data
  ☆38Updated last year
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆26Updated 5 years ago
• OpenGene / GeneFuse
  Gene fusion detection and visualization
  ☆119Updated 2 years ago
• kingsfordgroup / sailfish
  Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
  ☆126Updated 2 years ago
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆40Updated 4 years ago
• johandahlberg / awesome-10x-genomics
  List of tools and resources related to the 10x Genomics GEMCode/Chromium system
  ☆84Updated 5 years ago
• CGATOxford / CGATPipelines
  Collection of CGAT NGS Pipelines
  ☆43Updated 6 years ago
• FRED-2 / OptiType
  Precision HLA typing from next-generation sequencing data
  ☆194Updated 10 months ago
• EGA-archive / ega-download-client
  A Python-based EGA download client
  ☆96Updated 4 months ago
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆182Updated this week
• genenetwork / genenetwork2
  GeneNetwork (2nd generation)
  ☆34Updated this week
• CostaLab / reg-gen
  Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
  ☆108Updated 2 months ago
• cancerit / ascatNgs
  Somatic copy number analysis using WGS paired end wholegenome sequencing
  ☆69Updated 4 years ago
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 4 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆49Updated 5 years ago
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆146Updated 2 years ago
• MariaNattestad / Ribbon
  A genome browser designed for complex structural variants and long reads.
  ☆277Updated 4 months ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆62Updated 8 years ago