Alternatives and similar repositories for CFR_calculation

Users that are interested in CFR_calculation are comparing it to the libraries listed below

• mrc-ide / COVID19_CFR_submission
  Repository for all scripts required to replicate the CFR analysis for paper submission.
  ☆71Updated 5 years ago
• reconverse / outbreaks
  outbreaks: an R package compiling disease outbreak data
  ☆52Updated 3 years ago
• meganodris / International-COVID-IFR
  Age-specific mortality and immunity patterns of SARS-CoV-2 https://www.nature.com/articles/s41586-020-2918-0
  ☆24Updated 5 years ago
• wpgp / BEARmod
  Basic Epidemic, Activity, and Response COVID-19 model
  ☆31Updated 5 years ago
• kingaa / sbied
  Simulation-based Inference for Epidemiological Dynamics
  ☆26Updated 9 months ago
• epiforecasts / socialmixr
  Derive social mixing matrices from survey data.
  ☆43Updated this week
• dmarcelinobr / SciencesPo
  A tool set for analyzing political science data
  ☆36Updated 6 years ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 3 years ago
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆55Updated last year
• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆102Updated this week
• mkearney / uslides
  Rmarkdown template for pretty university-themed beamer presentations.
  ☆41Updated 7 years ago
• kjhealy / covdata
  COVID-related data from a variety of sources, packaged for use in R
  ☆83Updated 3 years ago
• jstockwin / EpiEstimApp
  Source code for the EpiEstim app.
  ☆35Updated 6 months ago
• epiforecasts / omicron-sgtf-forecast
  In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…
  ☆15Updated 3 years ago
• rmcelreath / elements_evolutionary_anthropology
  Text project for theoretical primer on human evolutionary ecology
  ☆35Updated 3 years ago
• cdcepi / COVID-19-ILI-forecasting
  COVID-19 ILI forecasting for the U.S.
  ☆16Updated 5 years ago
• european-modelling-hubs / covid19-forecast-hub-europe_archive
  European Covid-19 Forecast Hub.
  ☆49Updated last year
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 5 years ago
• epiforecasts / covid-rt-estimates
  National and subnational estimates of the time-varying reproduction number for Covid-19
  ☆34Updated 2 months ago
• epiforecasts / covidregionaldata
  An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…
  ☆37Updated 3 years ago
• cmu-delphi / epiforecast-R
  R package to implement and visualize several epidemiological forecasting methods.
  ☆20Updated last year
• weinbergerlab / excess_pi_covid
  Estimating excess mortality due to P&I in the US related to COVID-19
  ☆25Updated 5 years ago
• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated 2 years ago
• m-clark / sem
  <- Structural Equation Modeling from a broader context.
  ☆31Updated 7 years ago
• ljdursi / beyond-single-core-R
  Short tour of parallel and foreach packages, and how to think about scaling data analyses
  ☆75Updated 5 years ago
• seabbs / idmodelr
  Infectious disease model library and utilities
  ☆15Updated 3 years ago
• mhoehle / STA427_SM4IDE
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆20Updated 4 years ago
• mhoehle / mt3002-summer2020
  Video lectures, slides and code for "The Mathematics and Statistics of Infectious Disease Outbreaks" course at Stockholm University
  ☆36Updated 5 years ago
• hrbrmstr / cdcfluview
  R package to Retrieve U.S. Flu Season Data from the CDC FluView Portal (WHO & ILINet)
  ☆57Updated 2 years ago
• mjskay / tidybayes.rethinking
  R package to allow tidybayes to work with the rethinking package
  ☆26Updated last year