☆22Sep 6, 2026Updated last week
Alternatives and similar repositories for embpy
Users that are interested in embpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolbox for single-cell data analysis on sample level☆28Updated this week
- ☆17Aug 30, 2026Updated 2 weeks ago
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 8, 2026Updated last week
- ☆19Oct 17, 2024Updated last year
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆80Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated 3 weeks ago
- STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data☆63May 22, 2026Updated 3 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- ☆23Jan 6, 2026Updated 8 months ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆21Updated this week
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆25Updated this week
- Pareto Task Inference in Python☆23Updated this week
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts to help get fastqs☆19May 13, 2026Updated 4 months ago
- Multigrate: multiomic data integration for single-cell genomics☆35Updated this week
- Code of "A Geometric Perspective on Variational Autoencoders" (NeurIPS 2022)☆16Nov 19, 2024Updated last year
- This repo will contain the code for training DINO models and extracting features☆17Aug 4, 2023Updated 3 years ago
- Causal Differential Networks (ICML 2025)☆17Jun 3, 2025Updated last year
- inferring regulatory cellular dynamics☆190Sep 11, 2026Updated last week
- ☆36May 15, 2026Updated 4 months ago
- Remove unwanted batch effects☆16Sep 9, 2026Updated last week
- 一条命令就能安装精心打磨的工作流、命令、代理、MCP服务器和钩子☆43Oct 29, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆18Apr 23, 2026Updated 4 months ago
- Metric Space Magnitude Computations☆15Jun 30, 2026Updated 2 months ago
- ☆12May 13, 2025Updated last year
- Sample, estimate, aggregate: A recipe for causal discovery foundation models☆18Jun 21, 2024Updated 2 years ago
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 5 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆82Updated this week
- A differentiable JAX-based framework for vertex modeling and inverse design of epithelial tissues☆22Jul 30, 2026Updated last month
- Read and Write RDS files, in Python☆30Updated this week
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆29Jul 27, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Use cases for anndata.☆14Aug 18, 2026Updated last month
- ☆42Jan 19, 2026Updated 8 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 9 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆48May 27, 2026Updated 3 months ago
- Comprehensive suite for evaluating perturbation prediction models☆160Jul 27, 2026Updated last month
- Code and documentation for the curation of cellxgene datasets☆59Sep 6, 2026Updated last week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago