Alternatives and similar repositories for sparsecca:

Users that are interested in sparsecca are comparing it to the libraries listed below

• AllenInstitute / abc_atlas_access
  Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
  ☆67Updated this week
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• quantixed / manuscript-templates
  LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
  ☆81Updated 10 months ago
• AllenInstitute / MTG_celltypes
  Human cortical cell types
  ☆24Updated 5 years ago
• gersteinlab / PsychENCODE_SingleCell_Integrative
  Integrative Analyses across 388 human brain samples at single-cell resolution
  ☆14Updated last year
• UK-Biobank / UKB-RAP-Notebooks-Access
  UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).
  ☆91Updated 2 weeks ago
• BIG-S2 / GWAS
  GWAS Summary Statistics for Brain Imaging Phenotypes
  ☆20Updated 3 years ago
• teekuningas / icasso
  Python implementation for investigating the reliability of ICA estimates by clustering and visualization
  ☆17Updated 3 years ago
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆25Updated 3 years ago
• xiaoqunwang-lab / Allendigger
  AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…
  ☆14Updated 2 years ago
• richardajdear / AHBA_gradients
  Exploring intrinsic gradients of the AHBA
  ☆12Updated 2 months ago
• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆15Updated 4 years ago
• ucam-department-of-psychiatry / UKB
  repository for scripts used in UK BioBank analyses
  ☆37Updated last year
• RittmanResearch / maybrain
  Python package for analysing and visualising brain connectome data
  ☆10Updated 11 months ago
• yetianmed / BioAge
  ☆14Updated last year
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆104Updated 6 years ago
• andymckenzie / BRETIGEA
  Brain Cell Type Specific Gene Expression Analysis
  ☆15Updated last year
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 9 years ago
• chrisgorgo / alleninf
  Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.
  ☆30Updated 6 years ago
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 7 years ago
• epigenelabs / pyComBat
  pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, …
  ☆83Updated last year
• jcbmarques / clusterdv
  Density valley clustering (cluserdv). Matlab implementation.
  ☆26Updated 6 years ago
• chrelli / bioRxiv-word-template
  MS Word template for styling a manuscript for a bioRxiv submission
  ☆38Updated 6 years ago
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆123Updated 4 months ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆16Updated last year
• devsystemslab / snapseed
  ☆14Updated 3 weeks ago
• suinleelab / MD-AD
  ☆10Updated last year
• precimed / mostest
  Multivariate Omnibus Statistical Test
  ☆22Updated 9 months ago
• j-bac / elpigraph-python
  Python implementation of the ElPiGraph algorithm with cpu and gpu support
  ☆17Updated 6 months ago