CoAxLab / pycombat
Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
☆13Updated last year
Alternatives and similar repositories for pycombat:
Users that are interested in pycombat are comparing it to the libraries listed below
- ☆32Updated last year
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆104Updated 6 years ago
- ☆23Updated 2 years ago
- Similarity Network Fusion☆32Updated 9 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆25Updated 3 years ago
- Python scripts to extract and pre-process UKB data☆31Updated 5 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Updated 9 years ago
- Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.☆28Updated 6 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- Streamlining statistical analysis by using plotting keywords in Python.☆18Updated 11 months ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- Brain Cell Type Specific Gene Expression Analysis☆15Updated last year
- Python package for permutation tests, for statistics and machine learning.☆21Updated this week
- Similarity network fusion in Python☆81Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- GWAS Summary Statistics for Brain Imaging Phenotypes☆20Updated 3 years ago
- Calculate chlorpromazine-equivalent doses in R☆12Updated 4 years ago
- ☆16Updated 3 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 5 months ago
- ☆17Updated last year
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Updated 2 years ago
- Developing a Brain Atlas through Deep Learning☆52Updated last year
- Python implementation of the Mantel test, a significance test of the correlation between two distance matrices☆32Updated 3 months ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆15Updated 4 years ago
- Deep learning in genomics☆18Updated 6 years ago
- Code supporting Hansen et al., 2021, Nature Human Behaviour "Mapping gene transcription and neurocognition across human neocortex".☆19Updated 2 years ago
- ☆12Updated 6 months ago
- repository for scripts used in UK BioBank analyses☆38Updated last year
- Python implementations for Sparse CCA☆16Updated 2 years ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆76Updated 9 months ago