Alternatives and similar repositories for pycombat

Users that are interested in pycombat are comparing it to the libraries listed below

• CoBrALab / qbatch
  ☆33Updated 5 months ago
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆105Updated 7 years ago
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆26Updated 4 years ago
• andymckenzie / BRETIGEA
  Brain Cell Type Specific Gene Expression Analysis
  ☆17Updated 2 years ago
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆59Updated 2 years ago
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆39Updated 3 months ago
• spiros / tofu
  Tofu is a Python tool for generating synthetic UK Biobank data.
  ☆67Updated 2 years ago
• ethanbahl / cerebroViz
  ☆25Updated 3 years ago
• rmarkello / snfpy
  Similarity network fusion in Python
  ☆90Updated 5 years ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 10 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated last year
• maxconway / SNFtool
  Similarity Network Fusion
  ☆37Updated 10 years ago
• yangzi4 / iNMF
  Source code for integrative nonnegative matrix factorization
  ☆19Updated 7 years ago
• chrisgorgo / alleninf
  Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.
  ☆32Updated 7 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• ropensci / chlorpromazineR
  Calculate chlorpromazine-equivalent doses in R
  ☆13Updated 4 years ago
• mjin1812 / SMART
  Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping
  ☆14Updated 4 years ago
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated last year
• qbarthelemy / PyPermut
  Python package for permutation tests, for statistics and machine learning.
  ☆26Updated 9 months ago
• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆16Updated 4 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆58Updated last year
• broadinstitute / ml4h
  ☆166Updated last week
• dhglab / Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD
  Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".
  ☆13Updated 3 years ago
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 8 years ago
• BIG-S2 / GWAS
  GWAS Summary Statistics for Brain Imaging Phenotypes
  ☆20Updated 4 years ago
• RoysamLab / whole_brain_analysis
  ☆12Updated 2 years ago
• markur4 / plotastic
  Streamlining statistical analysis by using plotting keywords in Python.
  ☆18Updated last year
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆38Updated 3 years ago
• NDAR / nda-tools
  Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.
  ☆62Updated 2 weeks ago
• poldrack / narps
  Code related to Neuroimaging Analysis Replication and Prediction Study
  ☆38Updated 11 months ago