Alternatives and similar repositories for pycombat:

Users that are interested in pycombat are comparing it to the libraries listed below

• CoBrALab / qbatch
  ☆32Updated last year
• BICCN / cell-locator
  manually align specimens to annotated 3D spaces
  ☆19Updated last year
• ethanbahl / cerebroViz
  ☆23Updated 2 years ago
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆102Updated 6 years ago
• chrisgorgo / alleninf
  Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.
  ☆28Updated 6 years ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆17Updated 9 years ago
• maxconway / SNFtool
  Similarity Network Fusion
  ☆31Updated 9 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆35Updated 5 years ago
• jwcarr / mantel
  Python implementation of the Mantel test, a significance test of the correlation between two distance matrices
  ☆32Updated 2 months ago
• dhglab / Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD
  Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".
  ☆13Updated 2 years ago
• saphir746 / BiobankRead-Bash
  Python scripts to extract and pre-process UKB data
  ☆30Updated 5 years ago
• andymckenzie / BRETIGEA
  Brain Cell Type Specific Gene Expression Analysis
  ☆15Updated last year
• berenslab / mini-atlas
  Phenotypic variation of transcriptomic cell types in mouse motor cortex
  ☆24Updated 3 years ago
• qbarthelemy / PyPermut
  Python package for permutation tests, for statistics and machine learning.
  ☆21Updated 4 months ago
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 7 years ago
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆35Updated 3 years ago
• ucam-department-of-psychiatry / UKB
  repository for scripts used in UK BioBank analyses
  ☆35Updated last year
• ncullen93 / neuroCombat
  Harmonizing neuroimaging data across scanners and sites
  ☆33Updated 4 years ago
• ropensci / chlorpromazineR
  Calculate chlorpromazine-equivalent doses in R
  ☆12Updated 3 years ago
• francescojm / CELLector
  ☆12Updated 5 months ago
• AllenInstitute / open_dataset_tools
  Tools for accessing open data sets published by the Allen Institute for Brain Sciences
  ☆11Updated 3 years ago
• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆15Updated 3 years ago
• RittmanResearch / maybrain
  Python package for analysing and visualising brain connectome data
  ☆10Updated 9 months ago
• ntustison / ANTsRNetExamples
  That’s what I do: I drink and I know things.
  ☆13Updated 5 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆38Updated 4 months ago
• markur4 / plotastic
  Streamlining statistical analysis by using plotting keywords in Python.
  ☆17Updated 10 months ago
• richardajdear / AHBA_gradients
  Exploring intrinsic gradients of the AHBA
  ☆12Updated 3 weeks ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆51Updated 4 months ago
• BIG-S2 / GWAS
  GWAS Summary Statistics for Brain Imaging Phenotypes
  ☆19Updated 3 years ago
• WhitakerLab / scona
  Code to analyse structural covariance brain networks using python.
  ☆70Updated last year