CoAxLab / pycombatLinks
Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
☆13Updated last year
Alternatives and similar repositories for pycombat
Users that are interested in pycombat are comparing it to the libraries listed below
Sorting:
- ☆24Updated 2 years ago
- ☆32Updated 2 years ago
- Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.☆30Updated 6 years ago
- Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.☆57Updated 3 weeks ago
- Python scripts to extract and pre-process UKB data☆32Updated 6 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆104Updated 6 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆25Updated 3 years ago
- Python implementations for Sparse CCA☆18Updated 2 years ago
- Harmonizing neuroimaging data across scanners and sites☆34Updated 4 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 4 years ago
- repository for scripts used in UK BioBank analyses☆38Updated last year
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- Exploring intrinsic gradients of the AHBA☆13Updated 5 months ago
- Diffusion map based embedding and alignment☆68Updated 3 years ago
- Streamlining statistical analysis by using plotting keywords in Python.☆18Updated last year
- Code supporting Hansen et al., 2021, Nature Human Behaviour "Mapping gene transcription and neurocognition across human neocortex".☆20Updated 2 years ago
- Calculate chlorpromazine-equivalent doses in R☆12Updated 4 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Updated 2 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆51Updated 2 years ago
- ☆48Updated 3 years ago
- Python implementation of the Mantel test, a significance test of the correlation between two distance matrices☆33Updated 6 months ago
- Deep Learning tools for medical image and biomarker analysis☆19Updated 2 years ago
- nf-neuro is a nextflow neuroimaging library maintained by the SCIL team☆11Updated 2 weeks ago
- Similarity network fusion in Python☆83Updated 5 years ago
- neuroCombat R package☆24Updated 7 months ago
- manually align specimens to annotated 3D spaces☆20Updated 2 years ago
- Python package for permutation tests, for statistics and machine learning.☆26Updated last month
- bits of software for manipulating and analysing brain images in the nifti format☆14Updated 2 years ago
- This repository provides the AJIVE software in Matlab and all related Matlab scripts to reproduce the results in the paper Angle-basied J…☆11Updated 7 years ago
- Python package for analysing and visualising brain connectome data☆10Updated last year