CoAxLab / pycombat
Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
☆13Updated 10 months ago
Related projects: ⓘ
- ☆27Updated last year
- ☆22Updated 2 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆23Updated 2 years ago
- manually align specimens to annotated 3D spaces☆19Updated last year
- repository for scripts used in UK BioBank analyses☆32Updated 10 months ago
- Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.☆27Updated 6 years ago
- Deep Learning tools for medical image and biomarker analysis☆19Updated last year
- Python implementation of the Mantel test, a significance test of the correlation between two distance matrices☆32Updated 8 months ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆33Updated 3 years ago
- Calculate chlorpromazine-equivalent doses in R☆12Updated 3 years ago
- Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.☆48Updated last month
- Harmonizing neuroimaging data across scanners and sites☆34Updated 4 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆100Updated 5 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆47Updated 2 years ago
- Similarity Network Fusion☆29Updated 9 years ago
- Python scripts to extract and pre-process UKB data☆30Updated 5 years ago
- Python package for permutation tests, for statistics and machine learning.☆19Updated 3 months ago
- Python package for analysing and visualising brain connectome data☆10Updated 4 months ago
- That’s what I do: I drink and I know things.☆13Updated 4 years ago
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆11Updated 4 months ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆43Updated last year
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Updated 2 years ago
- Diffusion map based embedding and alignment☆68Updated 2 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆35Updated 4 years ago
- Developing a Brain Atlas through Deep Learning☆50Updated last year
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 2 years ago
- Python implementations for Sparse CCA☆12Updated last year
- Code supporting Hansen et al., 2021 "Mapping gene transcription and neurocognition across human neocortex".☆19Updated last year
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆15Updated 3 years ago
- ☆14Updated last year