CoAxLab / pycombatLinks
Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
☆14Updated 2 years ago
Alternatives and similar repositories for pycombat
Users that are interested in pycombat are comparing it to the libraries listed below
Sorting:
- ☆33Updated 2 months ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- Similarity Network Fusion☆35Updated 10 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆106Updated 6 years ago
- Brain Cell Type Specific Gene Expression Analysis☆16Updated last year
- ☆25Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Updated 4 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆55Updated 2 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 4 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆56Updated last year
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆14Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Updated 2 years ago
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago
- Source code for integrative nonnegative matrix factorization☆19Updated 7 years ago
- Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab☆17Updated 11 months ago
- ☆17Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.☆31Updated 7 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆38Updated 2 weeks ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆89Updated 4 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated last year
- Streamlining statistical analysis by using plotting keywords in Python.☆18Updated last year
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- Similarity network fusion in Python☆89Updated 5 years ago
- manually align specimens to annotated 3D spaces☆21Updated 2 years ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Updated 3 years ago
- Multivariate Omnibus Statistical Test☆22Updated last year