CoAxLab / pycombatLinks
Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
☆14Updated last year
Alternatives and similar repositories for pycombat
Users that are interested in pycombat are comparing it to the libraries listed below
Sorting:
- ☆33Updated 2 months ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆54Updated 2 years ago
- Similarity Network Fusion☆34Updated 10 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆26Updated 4 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆37Updated 4 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆106Updated 6 years ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆62Updated 2 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆17Updated 4 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- Brain Cell Type Specific Gene Expression Analysis☆16Updated last year
- ☆24Updated 3 years ago
- A versatile interface to the knockoff methodology.☆26Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆56Updated last year
- Streamlining statistical analysis by using plotting keywords in Python.☆18Updated last year
- Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.☆31Updated 7 years ago
- ☆20Updated 3 months ago
- Python package for permutation tests, for statistics and machine learning.☆26Updated 5 months ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆26Updated 4 years ago
- Similarity network fusion in Python☆88Updated 5 years ago
- Python implementation of the Mantel test, a significance test of the correlation between two distance matrices☆35Updated 10 months ago
- A data analysis package for high-dimensional, multi-block data.☆12Updated 3 years ago
- Deep learning in genomics☆20Updated 6 years ago
- MASI Lab Implementation of PheWAS in Python☆28Updated 11 months ago
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago
- Developing a Brain Atlas through Deep Learning☆53Updated 2 months ago
- ☆16Updated 3 years ago
- Programmatic interface to Synapse services for Python☆75Updated last week
- Multi-modality brain-age analysis in the UK Biobank☆12Updated 5 years ago