CoAxLab / pycombat
Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for pycombat
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆69Updated 5 months ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Updated 9 years ago
- ☆22Updated 2 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆35Updated 4 years ago
- manually align specimens to annotated 3D spaces☆19Updated last year
- Deep Learning tools for medical image and biomarker analysis☆19Updated last year
- ☆28Updated last year
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆101Updated 5 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆24Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆48Updated last month
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Updated 2 years ago
- Python package for permutation tests, for statistics and machine learning.☆20Updated last month
- Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.☆27Updated 6 years ago
- Python scripts to extract and pre-process UKB data☆30Updated 5 years ago
- Calculate chlorpromazine-equivalent doses in R☆12Updated 3 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆38Updated last month
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆11Updated 6 months ago
- Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.☆48Updated 3 months ago
- ☆10Updated 7 months ago
- repository for scripts used in UK BioBank analyses☆33Updated last year
- A data analysis package for high-dimensional, multi-block data.☆12Updated 2 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated last year
- ☆16Updated 3 years ago
- Brain Cell Type Specific Gene Expression Analysis☆14Updated 10 months ago
- Harmonizing neuroimaging data across scanners and sites☆34Updated 4 years ago
- Tutorials on introduction to Machine Learning and Visualization in Python☆9Updated 3 years ago
- Similarity Network Fusion☆31Updated 9 years ago
- Code for preparing and running the imageCCA method.☆20Updated 7 years ago