Alternatives and similar repositories for PsychENCODE_SingleCell_Integrative

Users that are interested in PsychENCODE_SingleCell_Integrative are comparing it to the libraries listed below

• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆132Updated 7 months ago
• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆81Updated 9 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆109Updated last month
• AllenInstitute / abc_atlas_access
  Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
  ☆76Updated last week
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆46Updated last year
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆75Updated 2 months ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆57Updated 3 months ago
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆56Updated 5 months ago
• xleizi / easySCF
  ☆40Updated 6 months ago
• ShobiStassen / VIA
  trajectory inference
  ☆101Updated 4 months ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆74Updated last month
• pachterlab / LP_2021
  ☆48Updated 3 weeks ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆76Updated 5 months ago
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆37Updated last month
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆49Updated last year
• LieberInstitute / spatialDLPFC
  spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
  ☆22Updated 3 months ago
• linnarsson-lab / adult-human-brain
  Cytograph version used for adult human-brain analysis
  ☆84Updated last year
• AllenInstitute / MTG_celltypes
  Human cortical cell types
  ☆24Updated 5 years ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆88Updated 4 months ago
• shuxiaoc / maxfuse
  ☆52Updated last year
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆42Updated 3 years ago
• ListerLab / pfc_development
  ☆16Updated 2 years ago
• douglasyao / FR-Perturb
  Factorize-Recover for Perturb-seq analysis (FR-Perturb)
  ☆20Updated 5 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆58Updated last year
• YosefLab / popV
  ☆76Updated this week
• rnacentre / BrainCellAtlas-reproducibility
  This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
  ☆17Updated 8 months ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆49Updated 3 weeks ago
• JianYang-Lab / gsMap
  Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
  ☆147Updated last week
• linnarsson-lab / developing-human-brain
  ☆32Updated 9 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆95Updated 3 months ago