gersteinlab / PsychENCODE_SingleCell_Integrative

Related projects ⓘ

Alternatives and complementary repositories for PsychENCODE_SingleCell_Integrative

• ListerLab / pfc_development
  ☆14Updated last year
• pachterlab / LP_2021
  ☆45Updated 7 months ago
• AllenInstitute / MTG_celltypes
  Human cortical cell types
  ☆24Updated 5 years ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆54Updated 3 weeks ago
• BIG-S2 / GWAS
  GWAS Summary Statistics for Brain Imaging Phenotypes
  ☆19Updated 3 years ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆113Updated last month
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆31Updated 2 years ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆41Updated 8 months ago
• dhglab / Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD
  Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".
  ☆13Updated 2 years ago
• GreenleafLab / Brain_ASD
  ☆9Updated 3 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆75Updated 5 months ago
• AllenInstitute / abc_atlas_access
  Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
  ☆51Updated this week
• theislab / gastrulation_analysis
  ☆10Updated 3 years ago
• YuanTian1991 / ChAMP
  ☆21Updated last year
• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆70Updated 3 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• ShobiStassen / VIA
  trajectory inference
  ☆86Updated last month
• linnarsson-lab / adult-human-brain
  Cytograph version used for adult human-brain analysis
  ☆72Updated 8 months ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆44Updated 4 years ago
• linnarsson-lab / developing-human-brain
  ☆24Updated 3 months ago
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆30Updated this week
• maggiecrow / MetaNeighbor
  ☆47Updated 6 years ago
• andymckenzie / BRETIGEA
  Brain Cell Type Specific Gene Expression Analysis
  ☆14Updated 10 months ago
• YangLabHKUST / XPASS
  Cross-population analysis using GWAS summary statistics
  ☆17Updated 4 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆44Updated last year
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆58Updated 3 years ago
• hamidghaedi / Methylation_Analysis
  Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis
  ☆19Updated 6 months ago
• iancovert / persist
  ☆14Updated 3 months ago
• felixhorns / FlyPN
  Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)
  ☆20Updated 7 years ago
• AllenInstitute / tasic2018analysis
  Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.
  ☆24Updated 6 years ago