Alternatives and similar repositories for PsychENCODE_SingleCell_Integrative

Users that are interested in PsychENCODE_SingleCell_Integrative are comparing it to the libraries listed below

• JianYang-Lab / gsMap
  Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
  ☆183Updated 3 weeks ago
• AllenInstitute / abc_atlas_access
  Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
  ☆86Updated this week
• ListerLab / pfc_development
  ☆19Updated 2 years ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆164Updated last month
• linnarsson-lab / adult-human-brain
  Cytograph version used for adult human-brain analysis
  ☆91Updated 4 months ago
• perslab / CELLECT
  CELLECT (CELL-type Expression-specific integration for Complex Traits)
  ☆90Updated last year
• NBISweden / workshop-spatial
  ☆15Updated 2 years ago
• LieberInstitute / spatialDLPFC
  spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
  ☆24Updated this week
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆120Updated 5 months ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆47Updated last year
• ShobiStassen / VIA
  trajectory inference
  ☆106Updated 9 months ago
• rnacentre / BrainCellAtlas-reproducibility
  This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
  ☆18Updated last year
• KrishnaswamyLab / SingleCellWorkshop
  ☆95Updated 4 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆80Updated 7 months ago
• ZhuangLab / SpatialBrainAgingCell22
  ☆13Updated 2 years ago
• pachterlab / LP_2021
  ☆51Updated 2 weeks ago
• linnarsson-lab / developing-human-brain
  ☆36Updated last week
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆61Updated 10 months ago
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 3 years ago
• shuxiaoc / maxfuse
  ☆56Updated last year
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆94Updated last week
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆133Updated last year
• Durenlab / LINGER
  ☆116Updated 5 months ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆62Updated 2 weeks ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆46Updated 4 years ago
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆37Updated last month
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆35Updated 2 weeks ago
• quadbio / Pando
  Multiome GRN inference.
  ☆130Updated last year
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆168Updated 2 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆76Updated last month