sylvainprigent / stracking
python library for particles tracking in 2D+t and 3D+t scientific images
☆14Updated 7 months ago
Alternatives and similar repositories for stracking:
Users that are interested in stracking are comparing it to the libraries listed below
- ExTrack MLE for diffusive noisy single-particle tracks☆12Updated 2 weeks ago
- Particle tracking by solving linear assignment problem.☆49Updated 3 weeks ago
- A napari plugin for clustering objects according to their properties.☆82Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆61Updated last week
- Course and exercises on deep learning for microscopy image analysis☆13Updated 10 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆26Updated this week
- ☆29Updated 10 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆74Updated this week
- Process and analyze surfaces using vedo in napari.☆24Updated 8 months ago
- ☆10Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆62Updated 2 weeks ago
- ☆45Updated 3 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 4 months ago
- Track and lineage visualization with btrack and Napari☆44Updated 3 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 7 months ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆18Updated 3 months ago
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆16Updated 3 weeks ago
- A MATLAB class for Mean Square Displacement analysis.☆36Updated 3 years ago
- 1d plotting in napari-based canvas.☆26Updated this week
- ☆38Updated 6 months ago
- A set of Qt-based widgets onto the pymmcore-plus model☆13Updated this week
- Pure python/C++ micro-manager ecosystem☆33Updated last week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆70Updated last month
- ☆20Updated last year
- Detection of Molecules plugin for ImageJ, Utrecht University☆15Updated 2 years ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆27Updated 4 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago