sylvainprigent / strackingLinks
python library for particles tracking in 2D+t and 3D+t scientific images
☆15Updated last year
Alternatives and similar repositories for stracking
Users that are interested in stracking are comparing it to the libraries listed below
Sorting:
- ExTrack MLE for diffusive noisy single-particle tracks☆14Updated this week
- The python-microscopy environment - an open-source package for light microscopy☆90Updated 2 weeks ago
- Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performan…☆79Updated last week
- ☆22Updated last year
- ☆75Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated last month
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆77Updated 2 months ago
- Microscope control software☆68Updated 5 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 7 months ago
- Python control of micro-manager for customized data acquisition☆172Updated 4 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated last month
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆70Updated this week
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated last year
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated last week
- ☆20Updated last year
- GPU accelerated beam propagation tools for biological light tissue simulations☆36Updated 6 years ago
- Course and exercises on deep learning for microscopy image analysis☆19Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 9 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 11 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Import Trackmate XML files in Python as Pandas dataframe☆10Updated 5 months ago
- ☆51Updated 3 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated 11 months ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆28Updated 10 months ago
- ☆31Updated last year
- Create 3D/4D animations using a natural language-based syntax☆60Updated 2 months ago
- Pure python/C++ micro-manager ecosystem☆41Updated this week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago