python library for particles tracking in 2D+t and 3D+t scientific images
☆17Jun 5, 2024Updated 2 years ago
Alternatives and similar repositories for stracking
Users that are interested in stracking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for reading common AFM file formats☆13Apr 9, 2026Updated 2 months ago
- Place to discuss the future design of a universal microscope hardware interface☆16May 18, 2021Updated 5 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud! ” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 3 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 11 months ago
- OmniSegger - from the Wiggins Lab at UW☆11Jun 18, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Version 3 of Python mother machine analysis code☆12Jun 22, 2023Updated 3 years ago
- Python implementation of Underdamped Langevin Inference, a method to infer the dynamical equation of underdamped stochastic systems from …☆17Jun 20, 2025Updated last year
- ☆19May 12, 2026Updated last month
- Collection of useful (to me) python scripts for interacting with napari☆13Aug 14, 2022Updated 3 years ago
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- A graphical user interface (GUI) for PIMS☆11Aug 12, 2020Updated 5 years ago
- ☆10Feb 5, 2026Updated 4 months ago
- Various parts made for fluorescence microscopy + optics work☆17Jul 22, 2019Updated 6 years ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.☆10Aug 23, 2021Updated 4 years ago
- ☆20Jun 11, 2026Updated 2 weeks ago
- Cellular Agent-based Modeling from a Clean Slate☆21Jun 22, 2026Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆36Apr 15, 2026Updated 2 months ago
- Blind and non-blind Richardson-lucy deconvolution using pytorch☆21May 29, 2024Updated 2 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Apr 30, 2023Updated 3 years ago
- A lightweight GUI-based program for multi-dimensional data processing and analysis☆12Jul 2, 2018Updated 7 years ago
- Workshop materials for "I2K 2022: From Images to Knowledge" conference☆11May 3, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Thanks to these examples, you can start to do python project with NI DAQmx devices faster (reqired python 3.6.4)☆10Mar 22, 2020Updated 6 years ago
- ☆13Mar 26, 2025Updated last year
- GUI for controlling NI DAQ devices and monitoring output/input voltages, current, and other variables☆14Sep 26, 2022Updated 3 years ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Jun 22, 2026Updated last week
- Deep Zoom Plate Viewer for microscopy images☆18May 7, 2026Updated last month
- A small tool to track the cell trajectories with Matlab.☆12Dec 6, 2021Updated 4 years ago
- ☆15Jul 29, 2022Updated 3 years ago
- Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.☆19Dec 17, 2025Updated 6 months ago
- Microglia morphology quantification tool☆14Apr 28, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ExTrack MLE for diffusive noisy single-particle tracks☆16Sep 13, 2025Updated 9 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 4 months ago
- Includes drivers for Amscope camera and simple UI for time lapse imagery☆17Jun 27, 2022Updated 4 years ago
- Particle tracking instrumentation and analysis in Python☆14Feb 22, 2023Updated 3 years ago
- An R package to detect collective spatio-temporal phenomena☆13Sep 25, 2025Updated 9 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year