Alternatives and similar repositories for CellSAM

Users that are interested in CellSAM are comparing it to the libraries listed below

• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆55Updated 3 years ago
• ksugar / samapi
  Segment Anything Model API
  ☆107Updated last month
• markowetzlab / slidl
  A Python library of pre- and post-processing tools for applying deep learning to whole-slide images
  ☆22Updated 3 years ago
• jiyuuchc / cellcutter
  ☆19Updated last year
• TIO-IKIM / CellViT-plus-plus
  ☆183Updated 6 months ago
• HistAI / hibou
  Hibou: Foundational Models for Pathology
  ☆76Updated last year
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆72Updated 2 years ago
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆174Updated 2 months ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated 2 months ago
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆356Updated 6 months ago
• SBU-BMI / champkit
  Benchmarking toolkit for patch-based histopathology image classification.
  ☆43Updated 2 years ago
• ZhangXX54 / DDTNet
  MIA-DDTNet: A Dense Dual-Task Network for Tumor-infiltrating Lymphocyte Detection and Segmentation in Histopathological Images of Breast …
  ☆14Updated 3 years ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆174Updated 2 months ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆41Updated last month
• digitalpathologybern / hover_next_train
  Training/Evaluation code for HoVer-NeXt
  ☆17Updated 3 months ago
• tand826 / wsiprocess
  Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks
  ☆25Updated 2 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆90Updated last week
• jiyuuchc / lacss
  A deep learning model for single cell segmentation from microsopy images.
  ☆36Updated this week
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• marrlab / DinoBloom
  Blood Cell Foundation Model based on DINOv2
  ☆63Updated last week
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆64Updated 3 years ago
• sartorius-research / LIVECell
  ☆206Updated 2 years ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆72Updated 3 years ago
• DIAGNijmegen / pathology-hooknet
  ☆67Updated last year
• Nellaker-group / happy
  ☆26Updated last month
• mahmoodlab / SISH
  Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
  ☆111Updated 2 years ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆36Updated 2 years ago
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆99Updated last year
• WeisiX / ITAS3D
  Image-translation-assisted segmentation in 3D
  ☆28Updated 3 years ago