Alternatives and similar repositories for atligator

Users that are interested in atligator are comparing it to the libraries listed below

• inpacdb / PepVis
  Peptide Virtual Screening Pipeline
  ☆11Updated 6 years ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆26Updated 3 years ago
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆17Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last week
• vmullig / ndm1_design_scripts
  Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1
  ☆19Updated 3 years ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated last month
• djmaity / md-davis
  MD DaVis: A python package to analyze molecular dynamics trajectories of proteins
  ☆16Updated 5 months ago
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated last month
• bbyun28 / QSAR-DrugDiscovery-with-RDkit
  ChEMBL Database used to create Lipinski Descriptors (ADME Pharmokinetic Profile) to use in a Random Forest Regression Model
  ☆13Updated 4 years ago
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆27Updated 5 months ago
• Vfold-RNA / RLDOCK
  ☆33Updated last year
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆28Updated last year
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• genki-kudo / Pocket-to-Concavity
  Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres
  ☆16Updated 9 months ago
• Wang-Lin-boop / PPI-Miner
  A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
  ☆19Updated 5 months ago
• JieDuTQS / PPDOCK
  ☆20Updated 2 months ago
• alirezaomidi / AFM-IDR
  Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"
  ☆16Updated 7 months ago
• cbouy / ProLIF
  Protein-Ligand Interaction Fingerprints
  ☆20Updated 4 years ago
• hocinebib / PisaPy
  Python code to automatically interact with PDBePISA web server
  ☆11Updated 3 years ago
• DeepRank / iScore
  iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…
  ☆31Updated 3 years ago
• Zuttergutao / GMXAnalysis
  For the purpose of post progressing of MD carried by gromacs
  ☆22Updated 2 weeks ago
• dkoes / show_contacts
  PyMOL Plugin for displaying polar contacts
  ☆17Updated 6 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated last week
• whymin / HOB
  Machine learning model for predicting Human Oral Bioavailability
  ☆13Updated 3 years ago
• guyuehuo / opendock
  ☆48Updated 7 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆42Updated 2 years ago
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• michal-brylinski / efindsite
  Ligand binding site prediction and virtual screening
  ☆12Updated 6 years ago
• Muzatheking12 / MzDOCK
  MzDOCK - An Automated GUI based pipeline for Molecular Docking
  ☆18Updated 5 months ago