Analysis and design of protein-protein or protein-peptide interactions based on atlas database.
☆15Sep 27, 2022Updated 3 years ago
Alternatives and similar repositories for atligator
Users that are interested in atligator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Binding pocket optimization based on force fields and docking scoring functions☆39Mar 19, 2025Updated last year
- Automated construction of protein chimeras and their analysis.☆15Sep 29, 2023Updated 2 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- PARCE version 1.0☆12Feb 1, 2021Updated 5 years ago
- ☆11Sep 2, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code available for the quantitative pharmacophores☆13Sep 7, 2022Updated 3 years ago
- ATTRACT program suite for macromolecular docking (protein-protein, protein-nucleic acid, protein-peptide)☆20Mar 13, 2026Updated 4 months ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- No description yet.☆17Aug 8, 2024Updated last year
- This repository contains the code for the work on protein-ligand interaction with GNNs and XAI☆36Jan 3, 2024Updated 2 years ago
- Python Modeling Interface☆14Jun 18, 2026Updated last month
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆15Oct 31, 2014Updated 11 years ago
- EdgeSHAPer: Bond-Centric Shapley Value-Based Explanation Method for Graph Neural Networks☆31Mar 30, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Combines FRESEAN mode analysis of a protein (based on a CG representation) with enhanced sampling using metadynamics☆16May 7, 2026Updated 2 months ago
- Python API for Pharmer☆12Jun 14, 2019Updated 7 years ago
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 3 years ago
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆31Jan 27, 2023Updated 3 years ago
- TPepPro: a deep learning model for predicting peptide-protein interactions☆15Jun 25, 2024Updated 2 years ago
- ProCare: A Point Cloud Registration Approach to Align Protein Cavities☆30Dec 30, 2022Updated 3 years ago
- Scoring methods for predicting the DDG upon protein mutation☆17Feb 20, 2023Updated 3 years ago
- Clusters protein chains based on CA distance difference☆18Jun 5, 2026Updated last month
- Adaptive and Reliable Classification: efficient conformity scores for multi-class classification problems☆33Jan 27, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Sep 14, 2022Updated 3 years ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- ☆16Jun 11, 2021Updated 5 years ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆62Oct 28, 2025Updated 8 months ago
- Protein preparation for MD, made faster and easier !☆15Dec 18, 2023Updated 2 years ago
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- A deep learning framework for predicting interactions between protein-protein interaction targets and modulators☆15Dec 2, 2023Updated 2 years ago
- A deep learning model to predict anticancer peptides.☆25Jul 10, 2019Updated 7 years ago
- ☆10Mar 11, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SE(3)-equivariant point cloud networks for virtual screening☆24Apr 29, 2023Updated 3 years ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆33Oct 23, 2021Updated 4 years ago
- Code for reproducing paper describing methods for representing peptides☆17Updated this week
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆31Sep 17, 2025Updated 10 months ago
- Protein-peptide docking with ESMFold language model☆16May 30, 2026Updated last month
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago