Alternatives and similar repositories for EpiFire

Users that are interested in EpiFire are comparing it to the libraries listed below

• rmcelreath / elements_evolutionary_anthropology
  Text project for theoretical primer on human evolutionary ecology
  ☆35Updated 2 years ago
• jgabry / bayes-vis-paper
  'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)
  ☆65Updated 4 years ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• omaclaren / open-learning-material
  Some teaching material and other educational resources
  ☆41Updated 6 months ago
• milkha / Splines_in_Stan
  Implementation of B-Splines in Stan
  ☆51Updated 7 years ago
• objornstad / epimdr
  R package for "Epidemics: Models and data using R"
  ☆55Updated 2 years ago
• bob-carpenter / case-studies
  Case studies in applied and computational statistics.
  ☆36Updated 6 months ago
• quentingronau / bridgesampling
  R package for bridge sampling
  ☆32Updated 11 months ago
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆17Updated 4 years ago
• stan-dev / docs
  Documentation for the Stan language and CmdStan
  ☆39Updated last week
• sshpa / bayesvl
  BayesVL package for Bayesian statistical analyses in R
  ☆20Updated 2 years ago
• seabbs / idmodelr
  Infectious disease model library and utilities
  ☆14Updated 2 years ago
• LarremoreLab / covid_serological_sampling
  ☆13Updated 4 years ago
• MJomaba / flu-evidence-synthesis
  Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques
  ☆21Updated 3 years ago
• betanalpha / stan_intro
  Draft introduction to probability and inference aimed at the Stan manual.
  ☆86Updated 8 years ago
• jgabry / bayes-workflow-book
  Source files for the book "Bayesian Workflow Using Stan"
  ☆96Updated 3 years ago
• ksvanhorn / ART-Forum-2017-Stan-Tutorial
  Materials from tutorial "Using Stan to Estimate Hierarchical Bayes Models," ART Forum 2017
  ☆57Updated 6 years ago
• cbreto / panelPomp
  R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)
  ☆11Updated 8 months ago
• rgiordan / StanSensitivity
  Tools for automatically generating local sensitivity measures in Stan.
  ☆36Updated 4 years ago
• bob-carpenter / diagnostic-testing
  statistical models to analyze diagnostic tests
  ☆15Updated 4 years ago
• kingaa / sbied
  Simulation-based Inference for Epidemiological Dynamics
  ☆25Updated last year
• hyunjimoon / SBC
  ☆57Updated 2 months ago
• stan-dev / loo
  loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)
  ☆153Updated last month
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆115Updated this week
• jtimonen / lgpr
  R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for in…
  ☆25Updated 8 months ago
• aakhmetz / COVID19IncubationPeriod
  Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)
  ☆14Updated 5 years ago
• jtimonen / odemodeling
  R-package for building and fitting Bayesian ODE models in Stan
  ☆27Updated 8 months ago
• stan-dev / projpred
  Projection predictive variable selection
  ☆112Updated this week
• akira-endo / COVID19_clustersize
  Analysis of COVID-19 transmission using cluster size distribution
  ☆11Updated 2 years ago
• epirecipes / epicookbook
  A cookbook of epidemiological models
  ☆13Updated 6 years ago