Alternatives and similar repositories for EpiFire

Users that are interested in EpiFire are comparing it to the libraries listed below

• betanalpha / stan_intro
  Draft introduction to probability and inference aimed at the Stan manual.
  ☆85Updated 9 years ago
• kingaa / sbied
  Simulation-based Inference for Epidemiological Dynamics
  ☆25Updated 3 months ago
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆119Updated last month
• epirecipes / epicookbook
  A cookbook of epidemiological models
  ☆13Updated 6 years ago
• dmbates / JuliaWorkshop
  Materials for a workshop on Julia programming at UW-Madison Statistics Dept. in June 2014
  ☆31Updated 6 years ago
• armgong / rjulia
  R package which integrating R and Julia
  ☆144Updated 7 years ago
• Non-Contradiction / convexjlr
  Disciplined Convex Programming in R using Convex.jl.
  ☆14Updated 6 years ago
• seantalts / simulation-based-calibration
  Repo for code from the SBC paper
  ☆24Updated 6 years ago
• lawmurray / LibBi
  Bayesian state-space modelling on high-performance hardware, including multicore, GPUs and distributed clusters.
  ☆101Updated last year
• tpoisot / ScientificComputingForTheRestOfUs
  Introduction to Scientific Computing 🦊
  ☆124Updated 11 months ago
• jgabry / bayes-vis-paper
  'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)
  ☆66Updated 4 years ago
• PublicHealthDynamicsLab / FRED
  The Public FRED Repository
  ☆78Updated last year
• LarremoreLab / covid_serological_sampling
  ☆13Updated 4 years ago
• ukhsa-collaboration / pygom
  ODE modelling in Python
  ☆30Updated last month
• reconverse / outbreaks
  outbreaks: an R package compiling disease outbreak data
  ☆52Updated 2 years ago
• cbreto / panelPomp
  R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)
  ☆11Updated 11 months ago
• rmcelreath / elements_evolutionary_anthropology
  Text project for theoretical primer on human evolutionary ecology
  ☆35Updated 2 years ago
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 4 years ago
• dmbates / MixedModelsinJulia
  Notebooks on fitting mixed-effects models in Julia
  ☆24Updated 7 years ago
• scheidan / adaptMCMC
  R package that provides an implementation of the generic adaptive Monte Carlo Markov chain sampler proposed by Vihola (2011).
  ☆10Updated last year
• stan-dev / projpred
  Projection predictive variable selection
  ☆112Updated 3 weeks ago
• aakhmetz / COVID19IncubationPeriod
  Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)
  ☆14Updated 5 years ago
• bob-carpenter / case-studies
  Case studies in applied and computational statistics.
  ☆38Updated 3 months ago
• stan-dev / httpstan
  HTTP interface to Stan, a package for Bayesian inference.
  ☆40Updated 6 months ago
• milkha / Splines_in_Stan
  Implementation of B-Splines in Stan
  ☆51Updated 7 years ago
• johnmyleswhite / JuliaVsR
  Comparisons between Julia and R
  ☆60Updated 5 years ago
• objornstad / epimdr
  R package for "Epidemics: Models and data using R"
  ☆55Updated 3 years ago
• PoisotLab / EcologicalNetworks.jl
  Everything you've never dreamed about measuring on ecological networks.
  ☆69Updated 2 years ago
• jrnold / ssmodels-in-stan
  State space models (dynamic linear models, hidden Markov models) implemented in Stan.
  ☆47Updated 7 years ago
• mgorinova / SlicStan
  A Stan-like probabilistic programming language.
  ☆68Updated 4 years ago