tjhladish / EpiFireLinks
A fast C++ API for simulating the spread of epidemics on contact networks.
☆41Updated last year
Alternatives and similar repositories for EpiFire
Users that are interested in EpiFire are comparing it to the libraries listed below
Sorting:
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- Text project for theoretical primer on human evolutionary ecology☆34Updated 2 years ago
- Simulation-based Inference for Epidemiological Dynamics☆25Updated last month
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆46Updated 2 years ago
- ☆13Updated 4 years ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- Python Model Builder - fit statistical models using algorithmic differentiation☆12Updated 6 years ago
- R package for statistical inference using partially observed Markov processes☆116Updated last week
- BayesVL package for Bayesian statistical analyses in R☆20Updated 3 years ago
- R package for "Epidemics: Models and data using R"☆55Updated 3 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated 3 weeks ago
- outbreaks: an R package compiling disease outbreak data☆52Updated 2 years ago
- A cookbook of epidemiological models☆13Updated 6 years ago
- Source files for the book "Bayesian Workflow Using Stan"☆96Updated 3 years ago
- ODE modelling in Python☆30Updated last week
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆21Updated 3 years ago
- Draft introduction to probability and inference aimed at the Stan manual.☆86Updated 9 years ago
- Implementation of B-Splines in Stan☆51Updated 7 years ago
- Projection predictive variable selection☆112Updated this week
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Case studies in applied and computational statistics.☆38Updated last month
- Tools for automatically generating local sensitivity measures in Stan.☆36Updated 4 years ago
- epidemia package☆48Updated 3 years ago
- This code uses the algebra solver in Stan (https://mc-stan.org/) to find the parameters of a distribution that produce a desired tail beh…☆29Updated 5 years ago
- Some teaching material and other educational resources☆41Updated 8 months ago
- Data and code for COVID-19 NPI effectiveness estimation.☆30Updated 4 years ago
- statistical models to analyze diagnostic tests☆15Updated 4 years ago
- 'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)☆66Updated 4 years ago