FactorialHMM, a Python package for fast exact inference in Factorial Hidden Markov Models
☆42Jun 3, 2020Updated 6 years ago
Alternatives and similar repositories for factorial_hmm
Users that are interested in factorial_hmm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 8 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- ☆15Apr 1, 2024Updated 2 years ago
- A python toolkit for building and querying multi-string BWTs☆27Mar 2, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11May 27, 2026Updated 3 months ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Mar 1, 2020Updated 6 years ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated 2 years ago
- DNA-D2S: a systematic error simulation Model for DNA Data Storage channel☆12Feb 14, 2022Updated 4 years ago
- Solve ciphers with python☆10Oct 24, 2018Updated 7 years ago
- A tool to construct repeats directly from raw reads☆17May 29, 2021Updated 5 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 3 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- ☆11Jul 20, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Jul 12, 2026Updated last month
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 5 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆22Jan 20, 2025Updated last year
- Physalia course Machine Learning for Multi-Omics Integration☆21Jun 11, 2025Updated last year
- ☆19Jul 15, 2026Updated last month
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆14Aug 5, 2025Updated last year
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 6 months ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆44Jul 7, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆24Feb 23, 2023Updated 3 years ago
- uPU, nnPU and PN learning with Extra Trees classifier.☆20Dec 2, 2024Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆26Sep 1, 2020Updated 6 years ago
- ☆11Nov 11, 2021Updated 4 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 8 years ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 6 months ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Gene Set Enrichment Analysis and Over Representation Analysis analysis using R☆21Jun 20, 2019Updated 7 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Reinforcement Learning Algorithms☆14May 28, 2018Updated 8 years ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆28Jan 25, 2021Updated 5 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago