Alternatives and similar repositories for ZebraZoom

Users that are interested in ZebraZoom are comparing it to the libraries listed below

• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated last year
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆136Updated last month
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆50Updated last year
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆57Updated 6 months ago
• nel-lab / FIOLA
  ☆34Updated 2 months ago
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 8 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• losonczylab / sima
  Python package for analysis of dynamic fluorescence microscopy data
  ☆101Updated 6 years ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆45Updated 2 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆69Updated last month
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• JingyiGF / HERBS
  ☆19Updated last year
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆31Updated 5 years ago
• AllenInstitute / patchseqtools
  QC and cell type assignment for patch-seq transcriptomics data
  ☆20Updated last year
• adamshch / SEUDO
  ☆8Updated 3 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆147Updated last month
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆46Updated 8 months ago
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆75Updated 4 months ago
• agiovann / CalBlitz
  Blazing fast calcium imaging analysis toolbox
  ☆22Updated 8 years ago
• NICALab / SUPPORT
  Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
  ☆83Updated 3 weeks ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated this week
• zhoupc / OASIS_matlab
  ☆39Updated 3 years ago
• deisseroth-lab / multifiber
  A GUI and library for doing multi-fiber photometry
  ☆18Updated 7 years ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆91Updated 8 months ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆20Updated 6 years ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆32Updated last month
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago