cxhernandez / cellcount
A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images
☆58Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for cellcount
- U-net based segmentation of nuclei in microscopy images☆51Updated 6 years ago
- ☆120Updated 7 years ago
- ☆63Updated 6 years ago
- Analysis of results of the Data Science Bowl 2018☆21Updated 4 years ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆42Updated 6 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆52Updated 4 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆58Updated 4 years ago
- ☆49Updated 6 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆49Updated 4 years ago
- Count-Ception: Counting by Fully Convolutional Redundant Counting☆52Updated 5 years ago
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆23Updated 3 years ago
- This is the source code for training and testing our three class CNN algorithm for generalized nuclei segmentation (IEEE TMI paper) using…☆53Updated 4 years ago
- Self-supervised learning for microscopy images☆55Updated 5 years ago
- PyTorch implementation of several neural network models for cellular image segmentation☆47Updated 5 years ago
- 2018 Data Science Bowl 2nd Place Solution☆103Updated 6 years ago
- Notebooks for VoidSeg☆16Updated 4 years ago
- This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…☆27Updated last year
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- The U-Net Segmentation plugin for Fiji (ImageJ)☆87Updated 2 years ago
- Survival Convolutional Neural Networks☆68Updated last year
- ☆77Updated 3 months ago
- ☆25Updated 4 years ago
- ☆21Updated 6 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆79Updated 2 years ago
- Staining unmixing and normalization for histopathology images.☆46Updated 5 years ago
- This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu…☆38Updated 5 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆193Updated 4 years ago
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆83Updated 4 years ago
- Algorithm for round cells identification in the brightfield microscopy images.☆21Updated last year