cxhernandez / cellcountLinks
A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images
☆60Updated 6 years ago
Alternatives and similar repositories for cellcount
Users that are interested in cellcount are comparing it to the libraries listed below
Sorting:
- U-net based segmentation of nuclei in microscopy images☆52Updated 7 years ago
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- ☆121Updated 8 years ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆43Updated 7 years ago
- ☆50Updated 7 years ago
- ☆62Updated 7 years ago
- ☆21Updated 7 years ago
- Staining unmixing and normalization for histopathology images.☆47Updated 6 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Updated 3 years ago
- 2018 Data Science Bowl 2nd Place Solution☆103Updated 7 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 5 years ago
- Three dimensional cross-modal image inference☆158Updated 4 years ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆197Updated 5 years ago
- This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…☆26Updated 2 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- unsupervised cell-level visual representation learning☆47Updated 6 years ago
- This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu…☆39Updated 6 years ago
- Self-supervised learning for microscopy images☆55Updated 6 years ago
- This is the source code for training and testing our three class CNN algorithm for generalized nuclei segmentation (IEEE TMI paper) using…☆54Updated 5 years ago
- Stain normalization parameters used in the paper "F. Ciompi et al., The importance of stain normalization in colorectal tissue classifica…☆28Updated 6 years ago
- CNN based segmentation codes☆47Updated 2 years ago
- ☆77Updated 9 months ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Updated last year
- nucleus/cell and histopathology image classification,detection,segmentation☆260Updated 4 years ago
- Survival Convolutional Neural Networks☆68Updated 2 years ago
- Notebooks for VoidSeg☆17Updated 5 years ago
- Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images☆82Updated 4 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 2 years ago
- Algorithm for round cells identification in the brightfield microscopy images.☆21Updated 2 years ago
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆85Updated 5 years ago