cxhernandez / cellcount
A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images
☆58Updated 5 years ago
Alternatives and similar repositories for cellcount:
Users that are interested in cellcount are comparing it to the libraries listed below
- U-net based segmentation of nuclei in microscopy images☆52Updated 6 years ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆42Updated 6 years ago
- Analysis of results of the Data Science Bowl 2018☆21Updated 4 years ago
- ☆63Updated 6 years ago
- ☆120Updated 7 years ago
- This is the source code for training and testing our three class CNN algorithm for generalized nuclei segmentation (IEEE TMI paper) using…☆53Updated 5 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆53Updated 4 years ago
- This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu…☆38Updated 5 years ago
- Count-Ception: Counting by Fully Convolutional Redundant Counting☆52Updated 5 years ago
- PyTorch implementation of several neural network models for cellular image segmentation☆47Updated 5 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ☆49Updated 6 years ago
- Three dimensional cross-modal image inference☆154Updated 4 years ago
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆84Updated 5 years ago
- ☆77Updated 2 months ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆50Updated 5 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Updated 6 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆86Updated 2 years ago
- InstantDL: An easy and convenient deep learning pipeline for image segmentation and classification☆42Updated last year
- Self-supervised learning for microscopy images☆55Updated 5 years ago
- Code repository for the UDCT project☆21Updated 5 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year
- ☆21Updated 6 years ago
- ☆40Updated 4 years ago
- 2018 Data Science Bowl 2nd Place Solution☆104Updated 6 years ago
- This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…☆27Updated 2 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆79Updated 2 years ago
- Neural networks to segment some type of biomedical images☆21Updated 7 years ago
- Notebooks for VoidSeg☆16Updated 5 years ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆194Updated 4 years ago