Main documentation site for NRNB GSoC project ideas and resources
☆163Jan 24, 2026Updated last month
Alternatives and similar repositories for GoogleSummerOfCode
Users that are interested in GoogleSummerOfCode are comparing it to the libraries listed below
Sorting:
- Fostering open source collaboration with technical writers.☆10Aug 17, 2019Updated 6 years ago
- Cytoscape App Store web application code☆17Jan 22, 2026Updated last month
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- JavaScript-based pathway viewer and editor☆35Feb 20, 2025Updated last year
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆54Feb 13, 2026Updated 2 weeks ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Jul 9, 2025Updated 7 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Jan 11, 2019Updated 7 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Dec 3, 2025Updated 2 months ago
- Python library for SBGN☆11Feb 9, 2026Updated 2 weeks ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- Network visualization webapp.☆14Mar 6, 2023Updated 2 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Label-free measurement of density and anisotropy from polarization-resolved images☆12Jun 4, 2023Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Mar 13, 2023Updated 2 years ago
- Python library for calling Cytoscape Automation via CyREST☆85Feb 3, 2026Updated 3 weeks ago
- A Quarto blog for Bioconductor community☆16Feb 12, 2026Updated 2 weeks ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Feb 29, 2016Updated 10 years ago
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Oct 30, 2025Updated 4 months ago
- Cytoscape.js tutorials project for GSOC 2016☆14Jan 11, 2017Updated 9 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- Spatial bio-chemical reaction model editor and simulator☆19Updated this week
- Drawing 'dendrogram' using 'ggtree'☆13Nov 1, 2025Updated 4 months ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated last month
- Graphs.jl-formatted graph files taken from the SNAP Datasets collection.☆17Dec 18, 2025Updated 2 months ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- RetroPath2.0 to pathways☆18Jan 28, 2026Updated last month
- A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML…☆20Jun 26, 2023Updated 2 years ago
- Command-line utilities and scripts for manipulating SBOL data☆19Oct 26, 2025Updated 4 months ago
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆40Jan 23, 2026Updated last month
- ☆24Sep 3, 2024Updated last year
- R package for InterMine☆18Apr 5, 2022Updated 3 years ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Oct 29, 2019Updated 6 years ago
- StochSS - Software as a Service for modeling, simulation, inference and analysis of biochemical models. https://live.stochss.se☆26Jan 28, 2026Updated last month
- Repository of tutorials for The COBRA Toolbox☆24Feb 6, 2026Updated 3 weeks ago
- GSimp is a Gibbs sampler-based missing value imputation approach☆20Sep 13, 2020Updated 5 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆26Jul 12, 2022Updated 3 years ago
- Code for paper: "Removing Biases from Molecular Representations via Information Maximization"☆20Apr 4, 2024Updated last year
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 4 months ago