A web application to visualize and edit pathway models
☆63Sep 5, 2026Updated this week
Alternatives and similar repositories for newt
Users that are interested in newt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web application to visualize and edit the pathway models represented by SBGN Process Description Notation☆16Jun 24, 2026Updated 2 months ago
- A web based visualization tool for process description maps in SBGN☆35Updated this week
- A Cytsocape.js extension to automatically pan when nodes are out of canvas bounds☆13Sep 29, 2023Updated 2 years ago
- A Cytoscape.js extension to provide context menu around elements and core instance☆89Aug 28, 2025Updated last year
- SyBLaRS: Systems Biology Layout & Rendering Service☆12Nov 18, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆21Oct 8, 2024Updated last year
- A Cytoscape.js extension to provide miscellenaous view utilities such as hiding and highlighting nodes/edges☆54Sep 9, 2025Updated 11 months ago
- Python library for SBGN☆12Updated this week
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 7 months ago
- A Cytsocape.js extension to provide a framework for grid interactions such as grid lines and snapping to grid, and guidelines and snap su…☆60Jun 26, 2026Updated 2 months ago
- A Cytoscape.js extension to import from and export to GraphML format☆32Mar 19, 2025Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.☆137Mar 4, 2026Updated 6 months ago
- Multiple sequence alignment browser☆12Dec 12, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 5 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- 📊 Unipept visualisations, packaged for easy reusability☆19Updated this week
- Web-service on cytoscape.js to layout graphs☆10May 13, 2021Updated 5 years ago
- View biological networks via Cytoscape.js and sbgn-ml☆70Feb 9, 2021Updated 5 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆18Feb 22, 2022Updated 4 years ago
- JBrowse plugin for methylation related things☆16Oct 9, 2018Updated 7 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Graph visualization and exploration software. Leverages cytoscape.js and provides rich and customized graph visualizations. Aims ultimate…☆16Feb 11, 2023Updated 3 years ago
- WikiPathways Database☆18Updated this week
- A Cytoscape.js extension to provide an undo-redo framework☆49Sep 9, 2021Updated 4 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated 2 years ago
- ☆22May 24, 2016Updated 10 years ago
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- A web application that keeps track of real-time spread of COVID19 in India as well as across the world.☆13Jun 3, 2022Updated 4 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated 2 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆27Jul 11, 2017Updated 9 years ago
- Inject Effector's state to React components simple way☆12Mar 2, 2023Updated 3 years ago
- A tool for performing collinearity-incorporating homology inference☆33Jul 17, 2026Updated last month
- Phylogenetic tree viewer based on D3.js☆60Aug 16, 2024Updated 2 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- cyeditor, a flow chart editor build with cytoscape.js☆73Feb 16, 2023Updated 3 years ago
- R interface to the JBrowse 2 Linear Genome View.☆40Aug 27, 2026Updated last week