naznoosh / MSALinks
☆9Updated 5 years ago
Alternatives and similar repositories for MSA
Users that are interested in MSA are comparing it to the libraries listed below
Sorting:
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 3 weeks ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆19Updated this week
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Updated 6 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Updated 4 years ago
- ☆11Updated last year
- Iterative error correction of long reads☆13Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 7 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Updated last month
- DNN-based small variant caller☆12Updated 3 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆12Updated last year
- Simple Python program to perform codon optimization or heterology calculations.☆10Updated 4 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Updated 3 weeks ago
- k-mer similarity analysis pipeline☆22Updated last month
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 3 weeks ago
- ☆24Updated 3 months ago
- EARRINGS: An efficient and ingenious adapter removal design for large-scale NGS meta-analyses☆9Updated 3 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Updated last year
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Updated 4 years ago
- Work on the variant_pipeline and initial r analysis used in calling variants from NGS data☆9Updated 6 years ago
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆11Updated 3 years ago
- ☆10Updated 3 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Updated last year
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 4 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last week
- ☆14Updated last year